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sw_4_scaffold_1553_4

Organism: SW_4_Bacteria_49_11

near complete RP 42 / 55 MC: 2 BSCG 47 / 51 MC: 1 ASCG 7 / 38
Location: comp(1539..2276)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_44_16_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 74.5
  • Coverage: 243.0
  • Bit_score: 370
  • Evalue 1.60e-99
cth:Cthe_0895 RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor id=136559 bin=ACD8 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=ACD8 organism_group=OD1-i organism_desc=OD1-i similarity UNIREF
DB: UNIREF100
  • Identity: 75.1
  • Coverage: 245.0
  • Bit_score: 369
  • Evalue 2.00e-99
RNA polymerase, sigma 70 subunit, RpoD similarity KEGG
DB: KEGG
  • Identity: 67.3
  • Coverage: 245.0
  • Bit_score: 319
  • Evalue 6.60e-85

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Taxonomy

R_OD1_Giovannonibacteria_44_16 → Giovannonibacteria → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 738
ATGGAAGGAGACGAGCAGGCCAAGCAGGAACTTGCGGAGGCGAACTTGCGTTTGGTGGTAAGCATCGCCAAAAAATACGTAGGCCGCAGTCCGAATCTCACGCTCCTCGATTTAATTCAGGAAGGAAACATCGGACTGTATAAGGCGATCGAGAAGTTTGACTACGAAAAAGGGTTTAAGTTTTCCACCTACGCGACGTGGTGGATTCGGCAGTCTATTACGCGTGCTCTCGCCGATCAGGCGCGTACCATTCGCATTCCGGTGCACATGGTAGAAACAATCAATCGATACACGCAGGTGGTACGCGGTTTGGTACAAGAGTTGGGACGCGAACCGTTACCCGAAGAGATTGCTGAAGAAATGGACATGGAAATCGAGAAGGTGCACCAGATCATCAAAATTTCTCAAGACACGGTGTCACTTGAGGCGCCTGTGGGAGATGAAGATGAGAATAGCTCTCTCGGAGACTTTATCGAGGATTCGGATTCGATCGATCTGACCCAAGAGGCGAGCCGTAACCTCCTCAAAGATCATCTGGGAGAGATTATGCATGATCTCAATGAGCGAGAACAGAAGATTTTGACCATGCGATTTGGTTTGGAGGACGAAATTCCGCACACGCTCGAAGAAGTGGGCGAAGAGTTCGGTGTCACCCGGGAGCGTATTCGCCAAATTGAGGTAAAGGCTCTTTCCAAGATCCGTAAACACAAGAGTGTCGAAAAGCTTAAAGGGTACTAA
PROTEIN sequence
Length: 246
MEGDEQAKQELAEANLRLVVSIAKKYVGRSPNLTLLDLIQEGNIGLYKAIEKFDYEKGFKFSTYATWWIRQSITRALADQARTIRIPVHMVETINRYTQVVRGLVQELGREPLPEEIAEEMDMEIEKVHQIIKISQDTVSLEAPVGDEDENSSLGDFIEDSDSIDLTQEASRNLLKDHLGEIMHDLNEREQKILTMRFGLEDEIPHTLEEVGEEFGVTRERIRQIEVKALSKIRKHKSVEKLKGY*