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sw_4_scaffold_14747_1

Organism: SW_4_Viridiplantae_55_7

partial RP 24 / 55 MC: 8 BSCG 15 / 51 MC: 1 ASCG 15 / 38 MC: 6
Location: comp(518..1243)

Top 3 Functional Annotations

Value Algorithm Source
Uncharacterized protein (Fragment) n=1 Tax=Populus trichocarpa RepID=U5FS93_POPTR similarity UNIREF
DB: UNIREF100
  • Identity: 40.1
  • Coverage: 232.0
  • Bit_score: 175
  • Evalue 9.10e-41
Structural constituent of nuclear pore isoform 1 {ECO:0000313|EMBL:EOX96378.1}; TaxID=3641 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eud similarity UNIPROT
DB: UniProtKB
  • Identity: 42.2
  • Coverage: 232.0
  • Bit_score: 177
  • Evalue 2.00e-41
structural constituent of nuclear pore, putative; K14306 nuclear pore complex protein Nup62 similarity KEGG
DB: KEGG
  • Identity: 40.9
  • Coverage: 242.0
  • Bit_score: 174
  • Evalue 4.90e-41

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Taxonomy

Theobroma cacao → Theobroma → Malvales → rosids → Streptophyta → Viridiplantae

Sequences

DNA sequence
Length: 726
CCGACCTCGTGGCCGACCCGACCCCGGCGCATCGCGTCCATAACGGCCCCCTTTTCCTCGTCGCCAACGCAGTCCTTTGGTAGCGGGTCGTCACTTGGAATTGGAGGACAACAACAACACCAACAAGAGCAGCAGCAGCAGCAATCGTCTGGCCCGCTCGAGATGCCATCAGAGATCAAGGGAAAGACGGTCGAAGAGATCATCAGAGATTGGAACCAGGAGCTCGAAAGGCAGACCCAGAAATTTGCAACACATGCATCATCAATTTCGGAGTGGGATAAGAGCATCGTTGAGAATCGGAAGGCGTTGATGGGCCTGCAGTCTGATCTCGCGCGTGTACAGAAGAGCCAGACAACGCTTGAGCGGCAGCTGAACCTGTTGGAGACTCACCAGGGCGAAATGAAGGAGTCCGTGAGCAAAATGGAGGAAGAGGCAAGACGGATGTATGAGAGCGCGCAGGGACAGATGGACGGCCACGCACAGCGGCGCGACGACATGTACAAGAGAGCGGAGCGAGTGAGCCAGCGGTTGGAGAATCTTGGGCAGCGTGTGCAACAATTGGTTGAGCATGTGAATCATCAGCAGCAGGGTGTTGGAGACGGAGGGACCGGCACGGGCGAGCAGGACCCACTCGAGGCGGCGGTGCGCATATTGAACAACCAGTTCACGTCGCTTCAATGGGTAGAGGAGGAGGCGAATAGACTACAGAAGAAGTTGCCGCACTGA
PROTEIN sequence
Length: 242
PTSWPTRPRRIASITAPFSSSPTQSFGSGSSLGIGGQQQHQQEQQQQQSSGPLEMPSEIKGKTVEEIIRDWNQELERQTQKFATHASSISEWDKSIVENRKALMGLQSDLARVQKSQTTLERQLNLLETHQGEMKESVSKMEEEARRMYESAQGQMDGHAQRRDDMYKRAERVSQRLENLGQRVQQLVEHVNHQQQGVGDGGTGTGEQDPLEAAVRILNNQFTSLQWVEEEANRLQKKLPH*