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sw_5_scaffold_4697_7

Organism: SW_5_Halosimplex_carlsbadense_69_17

partial RP 22 / 55 MC: 1 BSCG 18 / 51 ASCG 18 / 38 MC: 2
Location: comp(3416..4483)

Top 3 Functional Annotations

Value Algorithm Source
Nonsense mediated mRNA decay protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D0L8_9EURY similarity UNIREF
DB: UNIREF100
  • Identity: 75.9
  • Coverage: 377.0
  • Bit_score: 568
  • Evalue 4.20e-159
Nonsense mediated mRNA decay protein {ECO:0000313|EMBL:ELZ28237.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex ca similarity UNIPROT
DB: UniProtKB
  • Identity: 75.9
  • Coverage: 377.0
  • Bit_score: 568
  • Evalue 5.80e-159
nmd3; nonsense mediated mRNA decay protein similarity KEGG
DB: KEGG
  • Identity: 69.2
  • Coverage: 377.0
  • Bit_score: 530
  • Evalue 4.60e-148

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Taxonomy

Halosimplex carlsbadense → Halosimplex → Halobacteriales → Halobacteria → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 1068
ATGAGCCGGTCCGGCGAGTTCTGCCCGCGGTGTGGCGACCCGGTCGAGGCCCCCGAGGAGCGGCCGGACCTCCCCGGGGAGGTCGACAGCGGCCTCTGTGACGCCTGTTATTTCGAGGCGTTCGCCCTCGTCGACGCGCCCGACACCGTCGAGGTGCAGGTCTGTTCGCGGTGCGGGGCGGTCCATCGGGGCAACCGGTGGGTCGACGTCGGCGCCGAGGACTACACCGACGTCGCCGTCGAGGAGGTGTCCGGCGCGCTGGGCGTCCACGTCGACGCCACGGACGTCGGATGGGAGGTCGCCCCCGAGCAGGTCGACGAGAACACCATCCGGATGCACTGCGAGTTCACCGGCGTCGTCCGCGGGACCTTCGTCACCGAGGAGGTGGTCGTCCCCGTCCGGATCGCCCGCGAAACCTGCGACCGCTGTGGCCGGATCGCCGGCGGGTCCTACGCCAGCCTCGTCCAGGTCCGGGCCGACGGGCGTCCCCCGACCGACGGGGAACTCGCCCGTGCCCGCGAGATCGCGGAAGCCTACATCGCCGACCGCGAGGCCACGGGCGACCGCAACGCCTTCATCACCGAGGTCACGGAGGTCCCCGACGGTCTCGACATGAAGATCTCGACCAACCAGATGGGCGGCGGGATCGCAAAGCGGATCGTCGCACAACTGGGCGGCGGCTTCGAGGACCACGAGACCCTCGTGACCGAGGACGGCGACGGCAACGAGGTCTATCGAGTGACCTACGCGGTCCGCCTGCCGCGATACCGCCCCGGCGAGGTCATCGACCCGGAGGACGGCGACGGGCCGGTGCTCGTCCGGTCGGTCCAGGGCAACCTCAAGGGGGTCCGTCTCGCCAGCGGCGACGCCTACGAGGCGAGCTTCGAGGACAGCGACGCCCCCGAGGCCCGCCGCCTGGGCACCCGCGAGGAGGCCCAGAAAACGACCGTCGTCGCGGTCGAGGACGAACACGCGGTCCAGGTGCTCGACCCCGACACCGACGAGGTGCCTGTCCTCAAGAGCCGCGCCGGCCTCCACGTCGTTCCCGAGCGCGATAGCGAGGCGTAA
PROTEIN sequence
Length: 356
MSRSGEFCPRCGDPVEAPEERPDLPGEVDSGLCDACYFEAFALVDAPDTVEVQVCSRCGAVHRGNRWVDVGAEDYTDVAVEEVSGALGVHVDATDVGWEVAPEQVDENTIRMHCEFTGVVRGTFVTEEVVVPVRIARETCDRCGRIAGGSYASLVQVRADGRPPTDGELARAREIAEAYIADREATGDRNAFITEVTEVPDGLDMKISTNQMGGGIAKRIVAQLGGGFEDHETLVTEDGDGNEVYRVTYAVRLPRYRPGEVIDPEDGDGPVLVRSVQGNLKGVRLASGDAYEASFEDSDAPEARRLGTREEAQKTTVVAVEDEHAVQVLDPDTDEVPVLKSRAGLHVVPERDSEA*