ggKbase home page

sw_6_scaffold_1738_23

Organism: SW_6_UNK

megabin RP 51 / 55 MC: 43 BSCG 50 / 51 MC: 38 ASCG 38 / 38 MC: 38
Location: comp(20018..20944)

Top 3 Functional Annotations

Value Algorithm Source
Nuclear pre-mRNA splicing factor, component of splicing factor 3b n=1 Tax=Chlamydomonas reinhardtii RepID=A8HY93_CHLRE similarity UNIREF
DB: UNIREF100
  • Identity: 54.9
  • Coverage: 304.0
  • Bit_score: 309
  • Evalue 3.00e-81
Splicing factor 3B subunit 4 {ECO:0000313|EMBL:KIZ06294.1}; TaxID=145388 species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium.;" source="Monorap similarity UNIPROT
DB: UniProtKB
  • Identity: 55.3
  • Coverage: 311.0
  • Bit_score: 309
  • Evalue 4.20e-81
RNA-binding protein similarity KEGG
DB: KEGG
  • Identity: 36.5
  • Coverage: 115.0
  • Bit_score: 68
  • Evalue 3.30e-09

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Monoraphidium neglectum → Monoraphidium → Sphaeropleales → Chlorophyceae → Chlorophyta → Viridiplantae

Sequences

DNA sequence
Length: 927
ATGGCATCTGCTGCCGGGGGCAGGGTGAGCGCGAGCGCGGGGGTGTCGCTGCTCTCGCAGCAGAGTGGCGTTGGCCAGTCGTCGAGAGCTGCGAGCCAGCACGCGACAGTGTACGTGGGCAACTTGGACTCTGCGGCGCACGAGGCGCTGGTGTACGAGCTTTTCCTACAGTTTGGGCCCGTTCTGAACGTGTACATGCCCAAAGACCGCGTGAGCGGCGCGCACCAGGGGTATGGCTTCGTGGAGTTTGCGTCTGAGCGCGATGCCGAGTATTCCATGAAGGTGGCCAACATGGTAAAGCTCTTCAACAAACCGCTCAAGGTGAACAAAGCCGCCTCCGACCGCCGCGAGACTGATGTCGGCGCCAACCTCTTCATTGGCAATCTCGACCCAAGCGTGGACGAGAAATTGCTTTACGACACCTTCAGTGCCTTCGGTCTCATCATCGGCACGCCCAAAGTCATGCGCGACGCCGACACTGGCCAGTCGAAGGGCTTCGGCTTTGTGAGCTTCGACTGCTTCGAAGCCTCGGATGCCGCCATCGACACTATGCACAACCAGTACCTGTGCAATCGGCCCATCACCGTCAACTACGCCCTCAAAAAGGGCAGCAAGCACGAGCGCCACGGCGACGCCGCCGAGCGCATGCTTGCCACAAACAGCAAGCAGCAGCAGAGCGGAACGCGTGATGGCAGCTCCGCTGCTGCGCAGCCCTCCTCGACGTCTTCTTCCTCTCGGCCACACCAGCAGTTTGCCTCCACCATAAATTCCGCGCCGCCACCTCCTCCACCGTCCGACTTCTCTAATACTGCTGCTCACCAACAGTCGCCACAGCCGTCGAGTGCAATGCCCAACGGTGCGGGCGCAGCACCAGCACCGCCTCCTCCGGATGAGGAGTACGATCAAGAGTCAAAGAGCAATCGTTGA
PROTEIN sequence
Length: 309
MASAAGGRVSASAGVSLLSQQSGVGQSSRAASQHATVYVGNLDSAAHEALVYELFLQFGPVLNVYMPKDRVSGAHQGYGFVEFASERDAEYSMKVANMVKLFNKPLKVNKAASDRRETDVGANLFIGNLDPSVDEKLLYDTFSAFGLIIGTPKVMRDADTGQSKGFGFVSFDCFEASDAAIDTMHNQYLCNRPITVNYALKKGSKHERHGDAAERMLATNSKQQQSGTRDGSSAAAQPSSTSSSSRPHQQFASTINSAPPPPPPSDFSNTAAHQQSPQPSSAMPNGAGAAPAPPPPDEEYDQESKSNR*