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sw_6_scaffold_3104_6

Organism: SW_6_UNK

megabin RP 51 / 55 MC: 43 BSCG 50 / 51 MC: 38 ASCG 38 / 38 MC: 38
Location: comp(2860..3540)

Top 3 Functional Annotations

Value Algorithm Source
RNA helicase family protein n=1 Tax=Populus trichocarpa RepID=B9HTA3_POPTR similarity UNIREF
DB: UNIREF100
  • Identity: 55.2
  • Coverage: 230.0
  • Bit_score: 243
  • Evalue 2.00e-61
RNA helicase family protein isoform 3 {ECO:0000313|EMBL:EOY00859.1}; TaxID=3641 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons similarity UNIPROT
DB: UniProtKB
  • Identity: 55.9
  • Coverage: 222.0
  • Bit_score: 246
  • Evalue 4.20e-62
ATP-dependent helicase similarity KEGG
DB: KEGG
  • Identity: 44.7
  • Coverage: 188.0
  • Bit_score: 153
  • Evalue 9.80e-35

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Taxonomy

Theobroma cacao → Theobroma → Malvales → rosids → Streptophyta → Viridiplantae

Sequences

DNA sequence
Length: 681
CAGGACGACATCGACCGCCTTGTACGCAAACTCAACGACGCCGTTGCCTCCATGGATGAGGCCGACTGCCCCGATGCGCAGGTGCTCCCACTGCATGCCGCCCTCCCGCCCGAGATGCAGGCTCGCGTCTTCTCCGATCCTCCCACCAATGTCCGTCGCATTGTTGTGTCCACCAATATCGCCGAAACCTCTGTTACCGTTCCTGGCATTGTACACGTGGTTGATCCCGGGAAAGTGAAGCGTAAGGAGTATGATCCCTCCACCGGCATGGAGTCACTCGCTGTCGAGGACATCAGCCGCACCGAAGCAATCCAGCGCGCTGGCCGCGCCGGCCGCACGCAGCCCGGCAAGTGCTACAGACTGTACACGAAAGAGCTGTTTGAGAACCGCATGAAGAGCACAGCAAAGCCTGAGATTCAGCGCTCGAGCCTGGCAGCTACAGTGCTGCATTTGAAAGTCCTCTCGCTTGGTATTGATGTTCTCTCGTTCGATTTCCTCGACCCACCACCAAGAGAGGCATTGGAAGATGCGCTACGGCAGCTATACATCGTCGACGCCATTGACATAGGTGCACTGCTCACATCGCTTCATCTTTTATCAGCATTCAGCTTAAGCTTCTGTCCCTCACCAACTTTGCTGAGCTTAAAGCATTTTGTTTGCGACAGATGGGAATGCGACTGA
PROTEIN sequence
Length: 227
QDDIDRLVRKLNDAVASMDEADCPDAQVLPLHAALPPEMQARVFSDPPTNVRRIVVSTNIAETSVTVPGIVHVVDPGKVKRKEYDPSTGMESLAVEDISRTEAIQRAGRAGRTQPGKCYRLYTKELFENRMKSTAKPEIQRSSLAATVLHLKVLSLGIDVLSFDFLDPPPREALEDALRQLYIVDAIDIGALLTSLHLLSAFSLSFCPSPTLLSLKHFVCDRWECD*