ggKbase home page

sw_6_scaffold_245_1

Organism: SW_6_Halosimplex_carlsbadense_69_23

near complete RP 34 / 55 MC: 10 BSCG 25 / 51 MC: 7 ASCG 35 / 38 MC: 4
Location: 2..646

Top 3 Functional Annotations

Value Algorithm Source
Transcription initiation factor IIB n=1 Tax=Natronococcus amylolyticus DSM 10524 RepID=L9X9C0_9EURY similarity UNIREF
DB: UNIREF100
  • Identity: 85.4
  • Coverage: 213.0
  • Bit_score: 359
  • Evalue 3.00e-96
Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383};; TaxID=1227497 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natria similarity UNIPROT
DB: UniProtKB
  • Identity: 85.4
  • Coverage: 213.0
  • Bit_score: 359
  • Evalue 4.20e-96
transcription initiation factor B similarity KEGG
DB: KEGG
  • Identity: 85.0
  • Coverage: 214.0
  • Bit_score: 357
  • Evalue 2.50e-96

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Natronococcus amylolyticus → Natronococcus → Natrialbales → Halobacteria → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 645
TCGCTGTCCTCGCGCCAGCGCGAGAAGATGCAGCGCCTGCGCACCTGGAACGAGCGGTTCCGCACCCGCGACTCCAAGGAGCGCAACCTCAAGCAGGCGCTGGGCGAGATCGACCGGATGGCCTCGGCGCTCGGCCTCCCCGAGAACGTCCGCGAGACCGCCAGCGTCATCTACCGGCGCGCGCTCGACGAGGACCTCCTGCCGGGCCGCTCGATCGAGGGCGTCGCGACGTCGGCACTGTACGCGGCCGCCCGCCAGGCCGACACGCCCCGCAGCCTCGACGAGATGGCGGCCGTCTCGCGCATCGACAAGATGGAGCTGACCCGGACCTACCGGTACGTGGTCCGGGAACTGAGCCTGGAGATCCAGCCGGCCAAGCCCGAGAGCTACGTCCCGCGGTTCGTCTCGGACCTGAACCTGGGCGACGACGTCGAGCGGCGTGCCCGCGAACTCATCGAGAGCGCCCGCTCGGAGGGCGCCCTCAGCGGGAAGAGTCCCGTCGGCATCGCCGCCGCCGCCGTCTACGCCGCCGCGCTGCTGACAAACCAGCGGGTCACCCAGAGCGACGTCAGCGAGGTCGCCGACGTCTCCGAGGTCACCATCCGCAACCGCTACAAGGAACTCCTCGAATCCGAGGAAGTGTAG
PROTEIN sequence
Length: 215
SLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQADTPRSLDEMAAVSRIDKMELTRTYRYVVRELSLEIQPAKPESYVPRFVSDLNLGDDVERRARELIESARSEGALSGKSPVGIAAAAVYAAALLTNQRVTQSDVSEVADVSEVTIRNRYKELLESEEV*