ggKbase home page

sw_6_scaffold_602_4

Organism: SW_6_Halosimplex_carlsbadense_69_23

near complete RP 34 / 55 MC: 10 BSCG 25 / 51 MC: 7 ASCG 35 / 38 MC: 4
Location: 5730..6569

Top 3 Functional Annotations

Value Algorithm Source
Transcription initiation factor IIB n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CCV2_9EURY similarity UNIREF
DB: UNIREF100
  • Identity: 90.9
  • Coverage: 274.0
  • Bit_score: 473
  • Evalue 1.10e-130
Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383};; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halo similarity UNIPROT
DB: UniProtKB
  • Identity: 90.9
  • Coverage: 274.0
  • Bit_score: 473
  • Evalue 1.50e-130
tfb5; transcription initiation factor IIB similarity KEGG
DB: KEGG
  • Identity: 88.7
  • Coverage: 274.0
  • Bit_score: 466
  • Evalue 4.90e-129

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Halosimplex carlsbadense → Halosimplex → Halobacteriales → Halobacteria → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 840
ATGAGTGATTCACGACTTCGGACGAGAGAGGCGGACGAATCGACCGACGAACGAGCCGACGAGGCCTGCCCGGAGTGTGCCGGGGACGAGAAGTCCCGCGTCGGCGCGCCGACGACGAACATGATGCACGACAAGGGCCTTTCGACGAACATCGACTGGCGCGACCAGGACGCCTACGGCAACTCGCTGTCGTCGAACCAGCGCCAGAAGATGCAGCGCCTGCGCAAGTGGAACGAGCGGTTCCGCACCCGCGACTCCAAGGAGCGCAACCTCAAGCAGGCACTGGGCGAGATCGACCGCATGGCCTCGGCGCTCGGCCTCCCCGAGAACGTCCGCGAGACCGCCAGCGTCATCTACCGGCGCGCGCTCGACGAGGACCTCCTGCCGGGCCGTTCCATCGAAGGCGTCTCGACGGCGGCGGTTTACGCCGCCGCCCGCCAGGCCGGGGTGCCCCGGAGCCTCGACGAGATCACCGAGGTCTCCCGCGTCGAGAAATCGGAGATCGCACGCACCTACAGGTACGTCATCCGCGAACTGGGCCTGGAGGTCCAGCCGGCCGACCCCGAGAGCTACGTCCCGCGGTTCGCCTCGTCGCTGGAGATGTCCGACGAGGCCGAACACCGCGCGCGGACGCTGCTACAGAACGCCAAAGAGCAGGGCGTCCACTCGGGCAAGTCGCCGGTCGGCCTGGCCGCGGCCGCCGTCTACGCCGCCGCGCTCCTGACCAACGAGAAGACGACCCAGGCCGCCGTCTCGGAGGTCGCCGACATCTCCGAGGTCACCATCCGCAACCGATACCACGAACTCCTCGAGGCCGAGCAGGGTCTCACGGCGGCCTGA
PROTEIN sequence
Length: 280
MSDSRLRTREADESTDERADEACPECAGDEKSRVGAPTTNMMHDKGLSTNIDWRDQDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTAAVYAAARQAGVPRSLDEITEVSRVEKSEIARTYRYVIRELGLEVQPADPESYVPRFASSLEMSDEAEHRARTLLQNAKEQGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRYHELLEAEQGLTAA*