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SW_6_Actinobacteria_72_12

In projects: SW_6

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Taxonomy override: Actinobacteria

Metagenomic Context

Parent: SW_6_UNK

Properties

Avg. coverage: 11.71 Longest contig: 10.60 Kbp Bin length: 724.69 Kbp GC content: 71.73 %
Contigs count: 315 Features count: 907 rRNAs count: 0 tRNAs count: 6

Genome completeness

partial RP 29 / 55 BSCG 27 / 51 MC: 1 ASCG 7 / 38
Displaying items 101-150 of 315 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_6_scaffold_17737
Species: uncultured actinobacterium HF0500_35G12 (50%)
2 1556 bp 68.89 11.18 100.06
sw_6_scaffold_5494
Class: Actinobacteria (66.67%)
3 2317 bp 70.22 11.22 98.79
sw_6_scaffold_5123
Species: BJP_08E140C01_Coriobacteriales_62_12 (50%)
2 2439 bp 69.13 11.23 90.77
sw_6_scaffold_6542
Phylum: Actinobacteria (50%)
4 2047 bp 72.06 11.24 76.21
sw_6_scaffold_1926
Class: Actinobacteria (55.56%)
9 7314 bp 71.21 11.25 81.21
sw_6_scaffold_23220
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1395 bp 71.90 11.25 88.60
sw_6_scaffold_26637
Class: Actinobacteria (50%)
4 1999 bp 68.33 11.26 65.88
sw_6_scaffold_13186
Species: Conexibacter woesei (100%)
1 1250 bp 69.20 11.28 98.16
sw_6_scaffold_5153
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
4 2428 bp 71.33 11.29 97.73
sw_6_scaffold_17932
Phylum: Actinobacteria (50%)
4 2221 bp 70.55 11.30 62.00
sw_6_scaffold_16194
Class: Actinobacteria (50%)
4 1831 bp 73.02 11.31 85.20
sw_6_scaffold_24256
Species: RBG_16_Actinobacteria_68_12_curated (50%)
2 1194 bp 70.77 11.31 100.25
sw_6_scaffold_8129
Species: Micromonospora aurantiaca (50%)
2 1760 bp 71.31 11.31 98.86
sw_6_scaffold_8943
Order: Streptosporangiales (50%)
4 2909 bp 71.85 11.34 86.83
sw_6_scaffold_5351
Class: Actinobacteria (60%)
5 4058 bp 71.41 11.34 89.75
sw_6_scaffold_13565
Species: Streptomyces sp. AA4 (50%)
2 1226 bp 75.29 11.34 99.10
sw_6_scaffold_19549
Species: Cellulomonas flavigena (66.67%)
3 1356 bp 71.39 11.36 90.71
sw_6_scaffold_3983
Class: Actinobacteria (62.5%)
8 6868 bp 70.92 11.36 95.53
sw_6_scaffold_5584
Species: Ilumatobacter coccineus (50%)
2 3930 bp 70.61 11.37 92.75
sw_6_scaffold_7681
Phylum: Actinobacteria (60%)
5 3901 bp 70.96 11.38 80.21
sw_6_scaffold_11968
Species: Amycolatopsis azurea (50%)
2 2127 bp 71.32 11.38 93.51
sw_6_scaffold_9394
Species: Acidithrix ferrooxidans (50%)
2 1588 bp 71.79 11.40 98.43
sw_6_scaffold_7351
Phylum: Actinobacteria (75%)
4 1886 bp 69.30 11.40 90.19
sw_6_scaffold_6937
Class: Actinobacteria (75%)
4 2580 bp 69.65 11.40 82.44
sw_6_scaffold_2795
Class: Actinobacteria (85.71%)
7 8328 bp 72.89 11.41 90.42
sw_6_scaffold_8403
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1718 bp 71.83 11.41 94.82
sw_6_scaffold_17173
Species: Candidatus Microthrix parvicella (50%)
2 1841 bp 70.61 11.46 83.43
sw_6_scaffold_5446
Class: Actinobacteria (66.67%)
3 3561 bp 69.64 11.46 87.53
sw_6_scaffold_3461
Class: Actinobacteria (83.33%)
6 5005 bp 72.87 11.47 95.36
sw_6_scaffold_7068
Species: Parascardovia denticolens (50%)
2 1938 bp 70.33 11.51 85.91
sw_6_scaffold_5934
Phylum: Actinobacteria (50%)
4 3870 bp 72.43 11.52 77.83
sw_6_scaffold_10379
Species: Blastococcus saxobsidens (50%)
2 1482 bp 73.35 11.54 75.71
sw_6_scaffold_17577
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (100%)
2 1901 bp 72.65 11.57 100.05
sw_6_scaffold_8967
Class: Actinobacteria (66.67%)
3 2980 bp 72.28 11.58 93.52
sw_6_scaffold_6083
Class: Actinobacteria (75%)
4 2872 bp 73.40 11.59 92.86
sw_6_scaffold_7199
Species: Amycolatopsis vancoresmycina (50%)
2 1914 bp 73.25 11.60 95.92
sw_6_scaffold_7929
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1793 bp 69.55 11.60 63.25
sw_6_scaffold_6652
Species: Thermomonospora curvata (100%)
1 2023 bp 71.28 11.62 99.95
sw_6_scaffold_12491
Class: Actinobacteria (66.67%)
3 1299 bp 73.21 11.62 83.14
sw_6_scaffold_11724
Class: Actinobacteria (66.67%)
3 1358 bp 73.78 11.63 97.64
sw_6_scaffold_15095
Class: Actinobacteria (66.67%)
3 1638 bp 72.10 11.66 97.07
sw_6_scaffold_16917
Species: CG_Solirubrobact_01 (100%)
1 1045 bp 71.10 11.67 99.90
sw_6_scaffold_5217
Species: RBG_16_Actinobacteria_68_21_curated (50%)
2 2406 bp 74.36 11.68 96.26
sw_6_scaffold_17945
Species: marine actinobacterium MedAcidi-G3 (50%)
2 1001 bp 75.72 11.69 77.32
sw_6_scaffold_8146
Domain: Bacteria (80%)
5 2728 bp 75.33 11.69 84.57
sw_6_scaffold_5907
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (100%)
1 2207 bp 70.50 11.69 93.11
sw_6_scaffold_4397
Class: Actinobacteria (75%)
4 3838 bp 72.69 11.70 97.79
sw_6_scaffold_4640
Phylum: Actinobacteria (57.14%)
7 3307 bp 73.12 11.70 96.16
sw_6_scaffold_12632
Species: Gordonia paraffinivorans (50%)
2 1288 bp 72.44 11.72 93.87
sw_6_scaffold_12891
Phylum: Actinobacteria (66.67%)
3 3224 bp 70.32 11.72 74.91
Displaying items 101-150 of 315 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.