ggKbase | organisms

Consensus taxonomy: Gammaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SW_6_UNK

Properties

Avg. coverage: 9.38 Longest contig: 11.21 Kbp Bin length: 1.10 Mbp GC content: 67.23 %

Contigs count: 390 Features count: 1429 rRNAs count: 1 tRNAs count: 9

Genome completeness

partial RP 42 / 55 BSCG 38 / 51 MC: 2 ASCG 5 / 38 MC: 2

Displaying items 301-350 of 390 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_6_scaffold_11448 Species: Pseudomonas stutzeri (50%)	2	2527 bp	68.46	9.81	74.55
sw_6_scaffold_15597 Species: Hahella chejuensis (50%)	2	1110 bp	66.49	7.66	51.62
sw_6_scaffold_14445 Species: Ectothiorhodospira sp. PHS-1 (50%)	2	2269 bp	65.27	8.11	57.91
sw_6_scaffold_12833 Species: Thioalkalivibrio thiocyanoxidans (50%)	2	1274 bp	68.29	10.99	84.54
sw_6_scaffold_9507 Species: Spiribacter sp. UAH-SP71 (50%)	2	1574 bp	67.92	9.21	93.01
sw_6_scaffold_15393 Species: Thiobacillus prosperus (50%)	2	1121 bp	61.64	9.46	93.93
sw_6_scaffold_6284 Species: gamma proteobacterium HTCC5015 (50%)	2	2107 bp	63.55	11.44	79.45
sw_6_scaffold_12169 Species: Nitrosococcus oceani (50%)	2	1881 bp	67.62	8.45	95.85
sw_6_scaffold_5825 Species: Oleiagrimonas soli (50%)	2	2229 bp	68.15	8.88	88.43
sw_6_scaffold_14476 Species: BJP_IG2102_Gammaproteobacteria_62_140 (50%)	2	1173 bp	65.22	8.78	72.63
sw_6_scaffold_13326 Species: Brenneria sp. EniD312 (50%)	2	2778 bp	69.19	8.46	99.35
sw_6_scaffold_20953 Species: Psychrobacter sp. JCM 18902 (50%)	2	1700 bp	64.35	9.35	90.00
sw_6_scaffold_13097 Species: uncultured gamma proteobacterium HF4000_06A21 (50%)	2	1256 bp	71.34	9.63	93.15
sw_6_scaffold_6983 Species: Nitrococcus mobilis (50%)	2	1954 bp	64.28	8.14	99.80
sw_6_scaffold_27216 Species: Nitrococcus mobilis (100%)	2	1197 bp	66.58	7.77	86.72
sw_6_scaffold_19931 Species: Halomonas sp. BC04 (50%)	2	1414 bp	66.41	8.91	96.96
sw_6_scaffold_17250 Species: Spiribacter salinus (50%)	2	1029 bp	70.75	8.07	98.83
sw_6_scaffold_12880 Species: RBG_16_Gamma2_65_34_curated (50%)	2	1271 bp	69.24	9.99	78.60
sw_6_scaffold_5613 Species: Thioalkalivibrio sp. K90mix (50%)	2	2287 bp	67.77	11.41	75.95
sw_6_scaffold_16799 Species: Ectothiorhodospira sp. PHS-1 (50%)	2	1050 bp	70.38	8.76	95.71
sw_6_scaffold_28768 Species: Halomonas anticariensis (50%)	2	1106 bp	71.52	11.48	93.04
sw_6_scaffold_13113 Species: RBG_16_Gamma2_65_34_curated (50%)	2	1256 bp	65.53	7.80	99.84
sw_6_scaffold_9538 Species: Thioalkalivibrio sp. K90mix (50%)	2	1570 bp	69.11	8.92	92.48
sw_6_scaffold_13120 Species: Candidatus Competibacter denitrificans (50%)	2	1255 bp	68.69	11.08	100.16
sw_6_scaffold_16118 Species: Gallaecimonas xiamenensis (100%)	2	1518 bp	71.74	7.77	93.48
sw_6_scaffold_6323 Species: Grimontia indica (50%)	2	2099 bp	63.65	9.24	78.04
sw_6_scaffold_10135 Species: Allochromatium vinosum (50%)	2	1849 bp	69.88	9.73	88.59
sw_6_scaffold_9324 Species: Thioalkalivibrio sulfidiphilus (100%)	2	2238 bp	70.91	10.05	101.88
sw_6_scaffold_17055 Species: Thioalkalivibrio sulfidiphilus (50%)	2	1038 bp	68.69	8.86	100.58
sw_6_scaffold_15448 Species: RBG_16_Gamma2_64_10_curated (50%)	2	1952 bp	65.47	7.58	92.52
sw_6_scaffold_33955 Species: Salinisphaera hydrothermalis (50%)	2	1318 bp	65.17	11.15	76.25
sw_6_scaffold_5653 Species: Spiribacter salinus (50%)	2	2277 bp	67.15	8.92	91.30
sw_6_scaffold_7035 Species: Methylophaga lonarensis (50%)	2	1944 bp	70.01	8.18	85.65
sw_6_scaffold_11538 Species: Thioalkalivibrio sulfidiphilus (50%)	2	2243 bp	65.45	9.14	97.50
sw_6_scaffold_14996 Species: Thiobacillus prosperus (50%)	2	1142 bp	70.58	9.19	100.35
sw_6_scaffold_23561 Species: Ferrimonas balearica (50%)	2	1439 bp	61.71	7.71	82.35
sw_6_scaffold_8654 Species: Ectothiorhodospira sp. PHS-1 (50%)	2	1686 bp	70.64	12.22	84.88
sw_6_scaffold_10163 Species: R_Gamma2_60_33 (50%)	2	1501 bp	66.76	9.66	95.14
sw_6_scaffold_10624 Species: Halorhodospira halophila (50%)	2	1454 bp	70.36	11.07	98.01
sw_6_scaffold_14083 Species: BJP_IG2102_Gammaproteobacteria_62_140 (50%)	2	1195 bp	70.04	11.55	99.16
sw_6_scaffold_8430 Species: Grimontia hollisae (50%)	2	1715 bp	69.33	8.98	94.64
sw_6_scaffold_19147 Species: Pseudohaliea rubra (50%)	2	1511 bp	69.89	9.79	79.22
sw_6_scaffold_14781 Species: Thiobacillus prosperus (50%)	2	1885 bp	65.73	7.75	86.74
sw_6_scaffold_29117 Species: Marinobacter sp. ELB17 (50%)	2	1169 bp	67.92	8.98	92.13
sw_6_scaffold_4293 Species: Nitrococcus mobilis (50%)	2	2780 bp	69.17	8.53	95.07
sw_6_scaffold_15710 Species: Vibrio nigripulchritudo (50%)	2	1103 bp	65.28	8.52	81.60
sw_6_scaffold_16632 Species: Methylomonas methanica (50%)	2	1057 bp	67.27	9.84	90.26
sw_6_scaffold_34196 Species: Solemya velum gill symbiont (50%)	2	1144 bp	62.67	9.27	77.88
sw_6_scaffold_13410 Species: Spiribacter salinus (50%)	2	1235 bp	69.88	10.28	94.01
sw_6_scaffold_17099 Species: Halorhodospira halochloris (50%)	2	1036 bp	67.18	10.81	99.61

Displaying items 301-350 of 390 in total

SW_6_Gammaproteobacteria_67_9

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_6_Gammaproteobacteria_67_9

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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