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SW_6_Viridiplantae_55_9

SW_6_Eukaryota_56_9
In projects: SW_6

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_6_UNK

Properties

Avg. coverage: 8.65 Longest contig: 24.05 Kbp Bin length: 2.58 Mbp GC content: 55.78 %
Contigs count: 566 Features count: 2350 rRNAs count: 0 tRNAs count: 1

Genome completeness

partial RP 24 / 55 MC: 5 BSCG 12 / 51 ASCG 7 / 38 MC: 2
Displaying items 351-400 of 566 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_6_scaffold_11370
Species: Micromonas sp. RCC299 (50%)
2 1387 bp 54.87 8.36 65.97
sw_6_scaffold_5719
Species: Brassica rapa (50%)
2 2259 bp 55.33 8.41 75.17
sw_6_scaffold_8716
Species: Coccomyxa subellipsoidea (50%)
2 1677 bp 53.61 6.20 78.18
sw_6_scaffold_6874
Species: Setaria italica (50%)
2 1977 bp 59.43 8.95 87.71
sw_6_scaffold_8717
Species: Arabis alpina (50%)
2 2263 bp 55.46 8.04 73.44
sw_6_scaffold_5264
Species: Bathycoccus prasinos (50%)
2 2392 bp 55.73 9.95 77.88
sw_6_scaffold_8490
Species: Ostreococcus 'lucimarinus' (50%)
2 1708 bp 58.43 9.84 80.27
sw_6_scaffold_4805
Species: Volvox carteri (50%)
2 2566 bp 54.29 7.72 72.49
sw_6_scaffold_5037
Species: Physcomitrella patens (50%)
2 3567 bp 55.93 8.10 63.75
sw_6_scaffold_5038
Species: Triticum urartu (50%)
2 2472 bp 58.45 8.21 83.98
sw_6_scaffold_8033
Species: Micromonas pusilla (50%)
2 1776 bp 56.02 9.07 92.74
sw_6_scaffold_7804
Species: Auxenochlorella protothecoides (50%)
2 3126 bp 59.92 8.54 92.99
sw_6_scaffold_8034
Species: Glycine max (50%)
2 1776 bp 54.05 8.16 98.65
sw_6_scaffold_4348
Species: Bathycoccus prasinos (50%)
2 2756 bp 53.45 8.45 93.61
sw_6_scaffold_31093
Species: Selaginella moellendorffii (50%)
2 1267 bp 60.06 8.45 60.14
sw_6_scaffold_5735
Species: Ostreococcus tauri (50%)
2 2255 bp 59.20 8.69 88.47
sw_6_scaffold_6428
Species: Micromonas sp. RCC299 (50%)
2 2071 bp 54.13 9.37 78.22
sw_6_scaffold_11392
Species: Micromonas sp. RCC299 (50%)
2 1386 bp 59.96 8.80 93.51
sw_6_scaffold_6894
Species: Sorghum bicolor (50%)
2 2746 bp 57.06 8.30 85.00
sw_6_scaffold_3290
Species: Brassica rapa (50%)
2 3395 bp 53.61 7.86 85.98
sw_6_scaffold_3675
Species: Ostreococcus tauri (50%)
2 3118 bp 53.98 8.98 66.00
sw_6_scaffold_3902
Species: Jatropha curcas (50%)
2 2977 bp 57.21 8.63 101.68
sw_6_scaffold_5288
Species: Micromonas sp. RCC299 (50%)
2 3615 bp 55.93 7.63 78.67
sw_6_scaffold_16702
Species: Arabidopsis thaliana (50%)
2 1053 bp 62.39 8.83 94.59
sw_6_scaffold_2411
Species: Physcomitrella patens (50%)
2 4291 bp 59.80 8.55 93.54
sw_6_scaffold_3684
Species: Coccomyxa subellipsoidea (50%)
2 3112 bp 53.70 7.62 58.03
sw_6_scaffold_10947
Species: Coccomyxa subellipsoidea (50%)
2 1425 bp 58.04 9.26 89.26
sw_6_scaffold_11179
Species: Wollemia nobilis (50%)
2 1403 bp 58.45 7.20 97.72
sw_6_scaffold_7604
Species: Coccomyxa subellipsoidea (50%)
2 1846 bp 54.28 8.23 82.39
sw_6_scaffold_2546
Species: Selaginella moellendorffii (50%)
2 4111 bp 55.63 8.93 65.60
sw_6_scaffold_8528
Species: Bathycoccus prasinos (50%)
2 1703 bp 57.96 8.93 91.60
sw_6_scaffold_15797
Species: Ostreococcus tauri (50%)
2 1099 bp 57.78 7.37 73.16
sw_6_scaffold_17180
Species: Monoraphidium neglectum (50%)
2 1033 bp 50.15 8.81 45.60
sw_6_scaffold_2685
Species: Ostreococcus 'lucimarinus' (50%)
2 3956 bp 55.03 10.01 84.10
sw_6_scaffold_3701
Species: Micromonas pusilla (50%)
2 3102 bp 52.87 7.09 61.32
sw_6_scaffold_10274
Species: Micromonas sp. RCC299 (50%)
2 1492 bp 50.20 7.10 90.28
sw_6_scaffold_9690
Species: Micromonas pusilla (50%)
2 1555 bp 56.59 7.78 69.26
sw_6_scaffold_4856
Species: Ostreococcus tauri (50%)
2 2545 bp 54.22 7.15 57.88
sw_6_scaffold_9695
Species: Genlisea aurea (50%)
2 1554 bp 53.86 8.43 90.73
sw_6_scaffold_8312
Species: Selaginella moellendorffii (50%)
2 1732 bp 51.15 8.20 74.48
sw_6_scaffold_7161
Species: Micromonas sp. RCC299 (50%)
2 1922 bp 62.54 9.78 100.36
sw_6_scaffold_9697
Species: Tetraselmis sp. GSL018 (50%)
2 1553 bp 53.06 9.27 59.50
sw_6_scaffold_3936
Species: Solanum tuberosum (50%)
2 2956 bp 55.75 8.66 57.34
sw_6_scaffold_9700
Species: Micromonas pusilla (50%)
2 1553 bp 58.92 7.79 76.88
sw_6_scaffold_9240
Species: Ostreococcus tauri (50%)
2 1606 bp 54.86 8.97 81.82
sw_6_scaffold_11209
Species: Leersia perrieri (50%)
2 2103 bp 58.77 9.27 47.65
sw_6_scaffold_3943
Species: Eucalyptus grandis (50%)
2 2952 bp 54.40 8.64 65.24
sw_6_scaffold_6021
Species: Gossypium arboreum (50%)
2 2172 bp 61.33 10.13 82.60
sw_6_scaffold_16288
Species: Tetraselmis sp. GSL018 (50%)
2 1074 bp 59.87 9.59 102.79
sw_6_scaffold_3158
Species: Oryza sativa (50%)
2 3497 bp 56.33 8.81 66.83
Displaying items 351-400 of 566 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.