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SW_6_Viridiplantae_55_9

SW_6_Eukaryota_56_9
In projects: SW_6

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_6_UNK

Properties

Avg. coverage: 8.65 Longest contig: 24.05 Kbp Bin length: 2.58 Mbp GC content: 55.78 %
Contigs count: 566 Features count: 2350 rRNAs count: 0 tRNAs count: 1

Genome completeness

partial RP 24 / 55 MC: 5 BSCG 12 / 51 ASCG 7 / 38 MC: 2
Displaying items 401-450 of 566 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_6_scaffold_10069
Species: Coffea canephora (50%)
2 1511 bp 56.32 5.76 79.62
sw_6_scaffold_28461
Species: Micromonas sp. RCC299 (50%)
2 1288 bp 65.30 9.70 56.60
sw_6_scaffold_16523
Species: Chlorella variabilis (50%)
2 1062 bp 59.51 8.85 63.28
sw_6_scaffold_10303
Species: Physcomitrella patens (50%)
2 1489 bp 63.26 7.92 71.32
sw_6_scaffold_4189
Species: Monoraphidium neglectum (50%)
2 2824 bp 55.63 9.31 60.87
sw_6_scaffold_5802
Species: Brachypodium distachyon (50%)
2 2237 bp 55.61 9.12 52.84
sw_6_scaffold_12148
Species: Physcomitrella patens (50%)
2 1326 bp 50.90 8.30 42.31
sw_6_scaffold_5803
Species: Sorghum bicolor (50%)
2 2237 bp 56.24 9.30 75.37
sw_6_scaffold_7647
Species: Amborella trichopoda (50%)
2 4435 bp 61.42 7.69 84.49
sw_6_scaffold_8569
Species: Micromonas pusilla (50%)
2 2823 bp 55.76 7.72 92.77
sw_6_scaffold_3002
Species: Ostreococcus tauri (50%)
2 3627 bp 57.24 8.66 74.03
sw_6_scaffold_2198
Species: Micromonas sp. RCC299 (50%)
2 4598 bp 54.35 9.13 93.56
sw_6_scaffold_6730
Species: Micromonas pusilla (50%)
2 2007 bp 58.79 9.27 94.62
sw_6_scaffold_16532
Species: Selaginella moellendorffii (50%)
2 1627 bp 53.78 9.04 100.12
sw_6_scaffold_5118
Species: Citrus clementina (50%)
2 2441 bp 57.85 8.73 67.35
sw_6_scaffold_7885
Species: Ostreococcus tauri (50%)
2 1800 bp 57.50 7.06 64.50
sw_6_scaffold_3342
Species: Triticum urartu (50%)
2 3356 bp 57.15 8.79 87.16
sw_6_scaffold_11928
Species: Tetraselmis sp. GSL018 (50%)
2 1343 bp 65.52 8.56 81.76
sw_6_scaffold_4430
Species: Tetraselmis sp. GSL018 (50%)
2 2722 bp 56.43 7.27 64.81
sw_6_scaffold_4893
Species: Chlorella pyrenoidosa (50%)
2 2529 bp 56.07 7.39 81.02
sw_6_scaffold_3009
Species: Ostreococcus tauri (50%)
2 3620 bp 64.50 10.08 95.80
sw_6_scaffold_2713
Species: Physcomitrella patens (50%)
2 5547 bp 53.16 9.72 88.59
sw_6_scaffold_3973
Species: Setaria italica (50%)
2 2936 bp 55.07 7.66 85.01
sw_6_scaffold_10552
Species: Volvox carteri (50%)
2 1462 bp 58.21 8.69 90.49
sw_6_scaffold_9971
Species: Tetraselmis sp. GSL018 (50%)
2 1523 bp 58.11 6.11 94.16
sw_6_scaffold_15165
Species: Eucalyptus grandis (50%)
2 1133 bp 53.93 7.68 92.94
sw_6_scaffold_11943
Species: Micromonas sp. RCC299 (50%)
2 1742 bp 57.35 7.75 63.72
sw_6_scaffold_4445
Species: Micromonas sp. RCC299 (50%)
2 4028 bp 56.16 8.04 92.58
sw_6_scaffold_10100
Species: Micromonas pusilla (50%)
2 1508 bp 55.11 9.22 23.87
sw_6_scaffold_6064
Species: Glycine soja (50%)
2 2161 bp 57.47 8.61 54.14
sw_6_scaffold_9751
Species: Ostreococcus tauri (50%)
2 1547 bp 56.11 7.76 76.02
sw_6_scaffold_17018
Species: Tetraselmis sp. GSL018 (50%)
2 1040 bp 52.98 8.85 77.60
sw_6_scaffold_11957
Species: Ostreococcus tauri (50%)
2 1340 bp 60.30 8.58 92.69
sw_6_scaffold_2101
Species: Bathycoccus prasinos (50%)
2 4744 bp 55.23 8.56 47.93
sw_6_scaffold_11497
Species: Ostreococcus tauri (50%)
2 2310 bp 56.93 8.92 77.66
sw_6_scaffold_3366
Species: Physcomitrella patens (50%)
2 3336 bp 53.81 9.14 83.18
sw_6_scaffold_8384
Species: Oryza brachyantha (50%)
2 1721 bp 58.22 7.61 78.62
sw_6_scaffold_7234
Species: Coccomyxa subellipsoidea (50%)
2 1906 bp 58.34 8.29 50.05
sw_6_scaffold_4009
Species: Chlorella variabilis (50%)
2 3763 bp 53.28 9.33 50.47
sw_6_scaffold_2107
Species: Micromonas sp. RCC299 (50%)
2 4736 bp 56.06 8.97 86.78
sw_6_scaffold_2342
Species: Chlamydomonas reinhardtii (50%)
2 4385 bp 56.88 8.00 80.39
sw_6_scaffold_4012
Species: Nicotiana tabacum (50%)
2 2915 bp 55.51 8.44 81.51
sw_6_scaffold_1566
Species: Micromonas sp. RCC299 (50%)
2 5761 bp 57.96 9.15 82.02
sw_6_scaffold_6089
Species: Volvox carteri (50%)
2 2153 bp 54.20 7.76 55.18
sw_6_scaffold_10593
Species: Solanum lycopersicum (50%)
2 1457 bp 55.39 9.81 80.10
sw_6_scaffold_5862
Species: Coccomyxa subellipsoidea (50%)
2 2219 bp 60.39 9.33 98.15
sw_6_scaffold_14973
Species: Erythranthe guttata (50%)
2 1144 bp 56.21 6.47 85.75
sw_6_scaffold_3380
Species: Tetraselmis sp. GSL018 (50%)
2 3326 bp 53.28 9.35 71.35
sw_6_scaffold_5863
Species: Tetraselmis sp. GSL018 (50%)
2 2219 bp 56.15 6.94 37.45
sw_6_scaffold_7015
Species: Tetraselmis sp. GSL018 (50%)
2 1948 bp 54.62 7.24 83.16
Displaying items 401-450 of 566 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.