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SW_7_Viridiplantae_56_9

SW_7_Eukaryota_56_9
In projects: SW_7

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_7_UNK

Properties

Avg. coverage: 9.25 Longest contig: 31.92 Kbp Bin length: 2.69 Mbp GC content: 55.69 %
Contigs count: 630 Features count: 2347 rRNAs count: 0 tRNAs count: 4

Genome completeness

partial RP 32 / 55 MC: 8 BSCG 16 / 51 MC: 4 ASCG 13 / 38 MC: 3
Displaying items 451-500 of 630 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_7_scaffold_8427
Species: Tetraselmis sp. GSL018 (50%)
2 3692 bp 56.04 8.23 56.23
sw_7_scaffold_18951
Species: Aegilops tauschii (50%)
2 1098 bp 54.92 9.02 35.79
sw_7_scaffold_12249
Species: Physcomitrella patens (50%)
2 1569 bp 59.08 9.18 92.35
sw_7_scaffold_16649
Species: Ostreococcus tauri (50%)
2 1217 bp 55.55 9.78 76.66
sw_7_scaffold_17340
Species: Micromonas sp. RCC299 (50%)
2 1179 bp 59.97 6.53 100.25
sw_7_scaffold_20336
Species: Tetraselmis sp. GSL018 (50%)
2 1034 bp 61.80 7.64 63.25
sw_7_scaffold_7740
Species: Chlamydomonas reinhardtii (50%)
2 2266 bp 55.38 7.63 72.55
sw_7_scaffold_10912
Species: Ostreococcus tauri (50%)
2 1727 bp 54.72 8.22 72.61
sw_7_scaffold_14116
Species: Auxenochlorella protothecoides (50%)
2 1396 bp 58.81 8.88 70.92
sw_7_scaffold_2057
Species: Micromonas pusilla (100%)
2 12175 bp 52.34 8.94 100.19
sw_7_scaffold_5670
Species: Amborella trichopoda (50%)
2 2835 bp 55.73 8.85 94.60
sw_7_scaffold_17115
Species: Ostreococcus tauri (50%)
2 2278 bp 60.45 7.02 98.77
sw_7_scaffold_7284
Species: Ostreococcus 'lucimarinus' (50%)
2 2370 bp 57.43 9.03 85.57
sw_7_scaffold_9188
Species: Jatropha curcas (50%)
2 1978 bp 55.66 9.71 75.38
sw_7_scaffold_13893
Species: Chlamydomonas reinhardtii (50%)
2 1413 bp 50.67 10.26 65.39
sw_7_scaffold_19424
Species: Genlisea aurea (50%)
2 1074 bp 56.42 7.08 100.84
sw_7_scaffold_36960
Species: Ostreococcus tauri (50%)
2 1212 bp 58.75 6.60 91.83
sw_7_scaffold_14820
Species: Amborella trichopoda (50%)
2 1338 bp 57.77 7.47 76.68
sw_7_scaffold_11806
Species: Chlamydomonas reinhardtii (50%)
2 1619 bp 60.10 8.71 63.93
sw_7_scaffold_6146
Species: Picea sitchensis (50%)
2 2676 bp 53.51 10.13 90.13
sw_7_scaffold_6838
Species: Ostreococcus tauri (50%)
2 2487 bp 55.61 8.28 94.45
sw_7_scaffold_7760
Species: Micromonas pusilla (50%)
2 2261 bp 55.82 8.67 50.55
sw_7_scaffold_6609
Species: Ostreococcus tauri (50%)
2 2545 bp 49.78 9.71 54.34
sw_7_scaffold_20360
Species: Tetraselmis sp. GSL018 (50%)
2 1033 bp 55.86 9.87 42.11
sw_7_scaffold_10223
Species: Micromonas pusilla (50%)
2 1818 bp 57.70 10.45 93.40
sw_7_scaffold_6844
Species: Chlorella variabilis (50%)
2 4171 bp 58.67 9.90 91.49
sw_7_scaffold_9823
Species: Micromonas sp. RCC299 (50%)
2 1879 bp 54.76 8.62 68.01
sw_7_scaffold_13687
Species: Micromonas sp. RCC299 (50%)
2 1430 bp 52.38 10.56 67.97
sw_7_scaffold_8755
Species: Volvox carteri (50%)
2 2061 bp 57.93 10.14 95.34
sw_7_scaffold_21060
Species: Zea mays (50%)
2 1003 bp 55.13 8.87 65.80
sw_7_scaffold_11637
Species: Selaginella moellendorffii (50%)
2 1638 bp 54.09 9.16 70.88
sw_7_scaffold_3711
Species: Coccomyxa subellipsoidea (50%)
2 3774 bp 52.76 8.29 79.73
sw_7_scaffold_7776
Species: Prunus persica (50%)
2 2256 bp 55.67 9.26 85.24
sw_7_scaffold_18991
Species: Wollemia nobilis (50%)
2 1095 bp 57.53 10.14 80.27
sw_7_scaffold_3713
Species: Micromonas sp. RCC299 (50%)
2 3773 bp 55.31 8.27 95.57
sw_7_scaffold_5704
Species: Ostreococcus 'lucimarinus' (50%)
2 2825 bp 57.73 11.04 95.04
sw_7_scaffold_14616
Species: Micromonas sp. RCC299 (50%)
2 1353 bp 55.21 10.72 56.54
sw_7_scaffold_9604
Species: Auxenochlorella protothecoides (50%)
2 1916 bp 60.02 9.39 94.73
sw_7_scaffold_5250
Species: Brassica rapa (50%)
2 2984 bp 53.38 9.85 74.90
sw_7_scaffold_5712
Species: Micromonas pusilla (50%)
2 3298 bp 54.94 8.85 97.06
sw_7_scaffold_1096
Species: Ostreococcus tauri (50%)
2 7605 bp 56.96 9.30 86.79
sw_7_scaffold_1739
Species: Chlorella variabilis (50%)
2 8380 bp 53.75 9.53 99.92
sw_7_scaffold_7794
Species: Eucalyptus grandis (50%)
2 4151 bp 53.75 8.24 63.17
sw_7_scaffold_9238
Species: Micromonas pusilla (50%)
2 1970 bp 58.02 8.53 70.96
sw_7_scaffold_12079
Species: Selaginella moellendorffii (50%)
2 1586 bp 53.22 9.58 90.61
sw_7_scaffold_17400
Species: Tetraselmis sp. GSL018 (50%)
2 1177 bp 61.43 8.92 52.00
sw_7_scaffold_4804
Species: Coccomyxa subellipsoidea (50%)
2 3183 bp 56.83 9.49 88.12
sw_7_scaffold_9852
Species: Sorghum bicolor (50%)
2 1876 bp 57.52 8.53 83.16
sw_7_scaffold_18095
Species: Wollemia nobilis (50%)
2 1139 bp 48.64 10.97 47.67
sw_7_scaffold_9014
Species: Leersia perrieri (50%)
2 2008 bp 59.81 7.32 86.65
Displaying items 451-500 of 630 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.