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SW_7_Viridiplantae_56_9

SW_7_Eukaryota_56_9
In projects: SW_7

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_7_UNK

Properties

Avg. coverage: 9.25 Longest contig: 31.92 Kbp Bin length: 2.69 Mbp GC content: 55.69 %
Contigs count: 630 Features count: 2347 rRNAs count: 0 tRNAs count: 4

Genome completeness

partial RP 32 / 55 MC: 8 BSCG 16 / 51 MC: 4 ASCG 13 / 38 MC: 3
Displaying items 351-400 of 630 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_7_scaffold_4872
Species: Monoraphidium neglectum (50%)
2 3154 bp 57.48 9.35 87.79
sw_7_scaffold_7176
Species: Solanum lycopersicum (50%)
2 2395 bp 58.12 8.85 77.29
sw_7_scaffold_16781
Species: Picea sitchensis (50%)
2 1209 bp 56.74 6.29 76.43
sw_7_scaffold_9084
Species: Brachypodium distachyon (50%)
2 1995 bp 51.38 8.47 72.18
sw_7_scaffold_4416
Species: Bathycoccus prasinos (50%)
2 3365 bp 53.31 8.71 90.49
sw_7_scaffold_6951
Species: Elaeis guineensis (50%)
2 2452 bp 51.88 10.40 23.37
sw_7_scaffold_11925
Species: Chlorella variabilis (50%)
2 2801 bp 54.30 7.10 57.94
sw_7_scaffold_15633
Species: Micromonas sp. RCC299 (50%)
2 1278 bp 54.77 8.92 79.34
sw_7_scaffold_9467
Species: Coccomyxa subellipsoidea (50%)
2 1934 bp 54.24 7.34 46.23
sw_7_scaffold_15865
Species: Coccomyxa subellipsoidea (50%)
2 2467 bp 57.03 9.53 83.79
sw_7_scaffold_9319
Species: Micromonas pusilla (50%)
2 3294 bp 52.43 7.71 73.77
sw_7_scaffold_23149
Species: Prunus persica (50%)
2 1475 bp 60.81 8.07 75.46
sw_7_scaffold_13793
Species: Bathycoccus prasinos (50%)
2 1420 bp 59.86 10.49 98.45
sw_7_scaffold_6957
Species: Tetraselmis sp. GSL018 (50%)
2 2451 bp 52.67 8.49 88.62
sw_7_scaffold_9470
Species: Tetraselmis sp. GSL018 (50%)
2 2410 bp 55.06 8.22 81.04
sw_7_scaffold_9091
Species: Micromonas pusilla (50%)
2 1994 bp 50.95 10.08 75.68
sw_7_scaffold_11511
Species: Ostreococcus 'lucimarinus' (50%)
2 2733 bp 56.90 8.93 76.73
sw_7_scaffold_15408
Species: Ostreococcus 'lucimarinus' (50%)
2 2123 bp 55.96 7.82 98.63
sw_7_scaffold_3459
Species: Chlorella variabilis (50%)
2 3941 bp 55.77 9.11 75.82
sw_7_scaffold_9704
Species: Ostreococcus 'lucimarinus' (50%)
2 1899 bp 55.56 9.22 89.10
sw_7_scaffold_6731
Species: Micromonas pusilla (50%)
2 2514 bp 56.60 9.39 89.02
sw_7_scaffold_8635
Species: Micromonas pusilla (50%)
2 2087 bp 60.23 8.53 87.25
sw_7_scaffold_8866
Species: Ostreococcus 'lucimarinus' (50%)
2 2497 bp 53.50 11.21 89.15
sw_7_scaffold_10111
Species: Glycine soja (50%)
2 1837 bp 57.87 8.76 47.52
sw_7_scaffold_8637
Species: Bathycoccus prasinos (50%)
2 2086 bp 57.38 8.87 78.24
sw_7_scaffold_16797
Species: Ricinus communis (50%)
2 1208 bp 64.65 7.53 55.63
sw_7_scaffold_20482
Species: Tetraselmis sp. GSL018 (50%)
2 1027 bp 54.82 13.53 39.73
sw_7_scaffold_9708
Species: Tetraselmis sp. GSL018 (50%)
2 1898 bp 63.01 11.12 94.20
sw_7_scaffold_9099
Species: Auxenochlorella protothecoides (50%)
2 2591 bp 60.13 8.99 90.89
sw_7_scaffold_14494
Species: Chlorella variabilis (50%)
2 1363 bp 51.87 8.36 81.88
sw_7_scaffold_9710
Species: Prunus persica (50%)
2 1898 bp 54.64 10.06 84.88
sw_7_scaffold_6738
Species: Coccomyxa subellipsoidea (50%)
2 2513 bp 56.78 10.90 90.13
sw_7_scaffold_11941
Species: Micromonas pusilla (50%)
2 2010 bp 59.70 10.13 61.19
sw_7_scaffold_12401
Species: Botryococcus braunii (50%)
2 2302 bp 53.52 7.69 64.90
sw_7_scaffold_12632
Species: Micromonas sp. RCC299 (50%)
2 1528 bp 56.41 9.36 96.99
sw_7_scaffold_15650
Species: Coccomyxa subellipsoidea (50%)
2 2299 bp 48.80 8.35 34.06
sw_7_scaffold_2767
Species: Micromonas pusilla (50%)
2 5516 bp 55.53 9.99 88.38
sw_7_scaffold_9105
Species: Micromonas sp. RCC299 (50%)
2 1991 bp 59.37 7.94 58.92
sw_7_scaffold_14730
Species: Physcomitrella patens (50%)
2 1943 bp 59.80 8.34 58.67
sw_7_scaffold_5129
Species: Eutrema salsugineum (50%)
2 3038 bp 54.94 9.41 75.05
sw_7_scaffold_7433
Species: Micromonas pusilla (50%)
2 2336 bp 58.18 10.36 95.93
sw_7_scaffold_15422
Species: Micromonas sp. RCC299 (50%)
2 1292 bp 58.20 10.06 73.37
sw_7_scaffold_16114
Species: Tetraselmis sp. GSL018 (50%)
2 2015 bp 55.53 7.99 81.89
sw_7_scaffold_13582
Species: Helicosporidium sp. ATCC 50920 (50%)
2 1439 bp 65.32 9.24 82.56
sw_7_scaffold_2770
Species: Coccomyxa subellipsoidea (50%)
2 4523 bp 52.95 9.26 42.18
sw_7_scaffold_8883
Species: Chlorella variabilis (50%)
2 2037 bp 52.92 7.51 37.85
sw_7_scaffold_11951
Species: Micromonas sp. RCC299 (50%)
2 1602 bp 58.11 8.30 96.25
sw_7_scaffold_12412
Species: Morus notabilis (50%)
2 2369 bp 52.81 7.13 65.47
sw_7_scaffold_4007
Species: Glycine soja (50%)
2 3586 bp 53.29 9.59 56.72
sw_7_scaffold_5829
Species: Micromonas pusilla (50%)
2 2786 bp 56.46 8.22 89.27
Displaying items 351-400 of 630 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.