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SW_8_UNK

In projects: SW_8

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 17.32 Longest contig: 151.13 Kbp Bin length: 41.32 Mbp GC content: 58.51 %
Contigs count: 16401 Features count: 53796 rRNAs count: 12 tRNAs count: 452

Genome completeness

megabin RP 51 / 55 MC: 46 BSCG 48 / 51 MC: 40 ASCG 38 / 38 MC: 38
Displaying items 351-400 of 16401 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_8_scaffold_3389 12 9136 bp 55.69 9.52 85.21
sw_8_scaffold_1351
Class: Halobacteria (50%)
12 11580 bp 38.28 7.43 77.25
sw_8_scaffold_1559
Species: uncultured archaeon A07HB70 (66.67%)
12 10082 bp 63.78 14.72 93.26
sw_8_scaffold_2363
Order: Bacteroidetes Order II. Incertae sedis (50%)
12 6890 bp 64.86 43.60 84.12
sw_8_scaffold_4092 12 6043 bp 36.60 6.83 80.19
sw_8_scaffold_1399 12 12209 bp 54.89 9.29 84.11
sw_8_scaffold_731
Order: Halobacteriales (50%)
12 13864 bp 64.90 16.89 89.00
sw_8_scaffold_478 12 13459 bp 53.52 9.41 73.62
sw_8_scaffold_2465 12 11971 bp 56.06 8.14 83.53
sw_8_scaffold_479 12 12899 bp 53.37 8.86 80.63
sw_8_scaffold_1009
Order: Natrialbales (50%)
12 11802 bp 66.80 20.52 92.40
sw_8_scaffold_1332
Class: Oscillatoriophycideae (58.33%)
12 14931 bp 51.80 9.58 86.62
sw_8_scaffold_1263
Phylum: Cyanobacteria (91.67%)
12 12927 bp 46.26 9.96 78.30
sw_8_scaffold_1609 12 9506 bp 52.85 8.68 73.75
sw_8_scaffold_1540 12 10927 bp 55.29 9.76 84.97
sw_8_scaffold_849
Domain: Bacteria (58.33%)
12 10867 bp 65.34 48.15 88.81
sw_8_scaffold_2020 12 8223 bp 56.07 9.41 73.81
sw_8_scaffold_414
Domain: Bacteria (75%)
12 12116 bp 34.23 6.17 89.71
sw_8_scaffold_3758 12 7524 bp 53.12 9.02 75.20
sw_8_scaffold_805
Species: Rhodothermus marinus (50%)
12 7196 bp 64.72 51.13 88.67
sw_8_scaffold_2393 12 8204 bp 53.24 9.80 77.08
sw_8_scaffold_3439 12 4662 bp 41.76 14.84 97.55
sw_8_scaffold_876 11 9459 bp 52.82 9.25 70.09
sw_8_scaffold_1337
Class: Halobacteria (54.55%)
11 10885 bp 61.95 16.63 81.28
sw_8_scaffold_784
Class: Halobacteria (72.73%)
11 9900 bp 54.37 10.02 86.27
sw_8_scaffold_830 11 9340 bp 56.76 9.12 88.72
sw_8_scaffold_623
Phylum: Bacteroidetes (54.55%)
11 8396 bp 64.90 11.79 79.04
sw_8_scaffold_1130
Species: Salinibacter ruber (72.73%)
11 9481 bp 66.33 32.41 78.27
sw_8_scaffold_1867
Order: Natrialbales (63.64%)
11 7126 bp 53.42 13.35 72.03
sw_8_scaffold_2597 11 9606 bp 65.70 13.03 81.61
sw_8_scaffold_2038 11 7700 bp 55.05 8.91 80.88
sw_8_scaffold_647 11 12217 bp 54.69 9.06 88.43
sw_8_scaffold_1039
Domain: Bacteria (54.55%)
11 6232 bp 41.45 16.46 73.32
sw_8_scaffold_832
Order: Halobacteriales (54.55%)
11 8379 bp 60.57 12.71 96.85
sw_8_scaffold_3048
Domain: Bacteria (54.55%)
11 5036 bp 57.82 19.74 63.03
sw_8_scaffold_293 11 15977 bp 53.97 13.84 51.73
sw_8_scaffold_2502 11 5925 bp 54.13 10.28 74.48
sw_8_scaffold_1433
Species: Salinibacter ruber (54.55%)
11 11054 bp 59.82 11.53 68.50
sw_8_scaffold_2722
Order: Halobacteriales (54.55%)
11 10217 bp 58.03 18.76 87.62
sw_8_scaffold_6739 11 6015 bp 62.68 8.89 72.52
sw_8_scaffold_2229 11 6473 bp 53.59 9.18 66.55
sw_8_scaffold_513 11 9601 bp 53.91 9.56 64.21
sw_8_scaffold_2838 11 8254 bp 53.22 9.05 60.37
sw_8_scaffold_1888 11 10359 bp 53.47 9.38 75.30
sw_8_scaffold_2949
Class: Halobacteria (90.91%)
11 9582 bp 57.76 14.66 90.51
sw_8_scaffold_929 11 6657 bp 43.10 69.39 65.07
sw_8_scaffold_607 11 8485 bp 55.00 9.13 75.73
sw_8_scaffold_884 11 6825 bp 55.50 8.29 89.98
sw_8_scaffold_2161 11 11142 bp 56.08 9.08 66.88
sw_8_scaffold_1324
Order: Halobacteriales (54.55%)
11 12866 bp 47.58 10.57 89.35
Displaying items 351-400 of 16401 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.