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SW_8_UNK

In projects: SW_8

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 17.32 Longest contig: 151.13 Kbp Bin length: 41.32 Mbp GC content: 58.51 %
Contigs count: 16401 Features count: 53796 rRNAs count: 12 tRNAs count: 452

Genome completeness

megabin RP 51 / 55 MC: 46 BSCG 48 / 51 MC: 40 ASCG 38 / 38 MC: 38
Displaying items 401-450 of 16401 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_8_scaffold_1544 8 9742 bp 54.89 9.33 72.92
sw_8_scaffold_1097 12 9722 bp 56.34 8.96 73.16
sw_8_scaffold_2764 8 9681 bp 55.37 8.06 89.68
sw_8_scaffold_508
Domain: Bacteria (55.56%)
9 9673 bp 56.38 10.97 96.30
sw_8_scaffold_652 9 9645 bp 55.28 9.53 69.64
sw_8_scaffold_5782 15 9644 bp 54.77 8.86 76.74
sw_8_scaffold_3173
Order: Natrialbales (60%)
10 9642 bp 66.59 20.91 86.34
sw_8_scaffold_659 10 9638 bp 53.63 8.28 67.61
sw_8_scaffold_511
Class: Halobacteria (77.78%)
9 9626 bp 69.73 24.08 95.68
sw_8_scaffold_2683 7 9617 bp 54.65 8.97 74.40
sw_8_scaffold_1975 10 9613 bp 56.51 9.05 77.55
sw_8_scaffold_2597 11 9606 bp 65.70 13.03 81.61
sw_8_scaffold_513 11 9601 bp 53.91 9.56 64.21
sw_8_scaffold_1319 8 9584 bp 54.97 8.59 78.76
sw_8_scaffold_2949
Class: Halobacteria (90.91%)
11 9582 bp 57.76 14.66 90.51
sw_8_scaffold_556 7 9573 bp 52.87 9.15 62.80
sw_8_scaffold_4489
Order: Halobacteriales (63.64%)
11 9559 bp 64.01 12.86 80.97
sw_8_scaffold_863 14 9550 bp 57.02 9.71 75.24
sw_8_scaffold_867 14 9547 bp 50.45 9.13 66.04
sw_8_scaffold_687 6 9546 bp 54.89 9.37 81.58
sw_8_scaffold_1490 8 9521 bp 52.89 9.72 81.64
sw_8_scaffold_1609 12 9506 bp 52.85 8.68 73.75
sw_8_scaffold_1310
Phylum: Bacteroidetes (71.43%)
7 9504 bp 63.27 13.89 79.55
sw_8_scaffold_915
Order: Haloferacales (50%)
10 9493 bp 58.24 19.57 82.58
sw_8_scaffold_1613 7 9492 bp 55.14 8.30 82.36
sw_8_scaffold_1130
Species: Salinibacter ruber (72.73%)
11 9481 bp 66.33 32.41 78.27
sw_8_scaffold_1116 9 9475 bp 56.49 8.53 85.74
sw_8_scaffold_777 7 9467 bp 53.79 8.60 51.43
sw_8_scaffold_2435
Domain: Bacteria (100%)
9 9463 bp 60.02 12.08 94.22
sw_8_scaffold_876 11 9459 bp 52.82 9.25 70.09
sw_8_scaffold_597
Class: Halobacteria (63.64%)
11 9449 bp 56.89 21.19 83.50
sw_8_scaffold_580
Domain: Bacteria (60%)
5 9443 bp 63.87 42.76 87.75
sw_8_scaffold_530
Phylum: Proteobacteria (57.14%)
7 9420 bp 61.13 16.35 90.70
sw_8_scaffold_2778 10 9366 bp 55.25 9.09 60.95
sw_8_scaffold_1035
Phylum: Bacteroidetes (60%)
10 9365 bp 61.72 36.04 89.82
sw_8_scaffold_2330 9 9363 bp 57.43 8.54 82.03
sw_8_scaffold_830 11 9340 bp 56.76 9.12 88.72
sw_8_scaffold_1214
Domain: Bacteria (50%)
8 9331 bp 56.77 17.00 83.98
sw_8_scaffold_1339
Order: Halobacteriales (55.56%)
9 9321 bp 66.87 14.79 82.75
sw_8_scaffold_737
Domain: Bacteria (80%)
10 9318 bp 50.89 10.22 86.03
sw_8_scaffold_1091 14 9316 bp 53.37 8.43 69.75
sw_8_scaffold_1176 6 9297 bp 52.98 9.04 72.31
sw_8_scaffold_3382 10 9295 bp 53.43 9.28 77.11
sw_8_scaffold_1032 10 9293 bp 55.78 9.48 82.74
sw_8_scaffold_1240 4 9279 bp 52.25 9.71 50.60
sw_8_scaffold_582
Species: halophilic archaeon J07HX64 (55.56%)
9 9274 bp 68.21 26.62 90.61
sw_8_scaffold_2136 13 9270 bp 55.77 17.87 87.64
sw_8_scaffold_2111
Order: Bacteroidetes Order II. Incertae sedis (50%)
8 9249 bp 56.38 12.33 69.83
sw_8_scaffold_540
Order: Halobacteriales (50%)
6 9233 bp 70.76 46.90 95.04
sw_8_scaffold_1532
Phylum: Bacteroidetes (60%)
5 9200 bp 59.52 15.93 88.17
Displaying items 401-450 of 16401 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.