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SW_8_Actinobacteria_71_9

In projects: SW_8

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Taxonomy override: Actinobacteria

Metagenomic Context

Parent: SW_8_UNK

Properties

Avg. coverage: 9.00 Longest contig: 3.49 Kbp Bin length: 231.15 Kbp GC content: 70.71 %
Contigs count: 151 Features count: 336 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 22 / 55 BSCG 23 / 51 MC: 1 ASCG 3 / 38
Displaying items 51-100 of 151 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_8_scaffold_12903
Species: Patulibacter medicamentivorans (50%)
2 1275 bp 70.51 9.88 98.59
sw_8_scaffold_13139
Species: Candidatus Microthrix parvicella (50%)
2 1260 bp 70.32 8.02 84.05
sw_8_scaffold_13370
Species: Propionibacterium acidifaciens (50%)
2 1246 bp 72.71 8.99 92.94
sw_8_scaffold_5999
Species: Saccharopolyspora erythraea (50%)
2 2106 bp 69.28 9.59 100.14
sw_8_scaffold_17292
Species: RBG_16_Actinobacteria_70_17_curated (50%)
2 1042 bp 71.88 7.20 99.90
sw_8_scaffold_13377
Species: Streptomyces viridochromogenes (50%)
2 1246 bp 72.55 9.15 92.22
sw_8_scaffold_13841
Species: Streptosporangium roseum (50%)
2 1217 bp 73.05 10.93 100.33
sw_8_scaffold_18715
Species: Stackebrandtia nassauensis (50%)
2 1453 bp 69.24 8.53 100.76
sw_8_scaffold_17076
Species: Beutenbergia cavernae (100%)
2 1502 bp 73.97 10.99 90.08
sw_8_scaffold_15697
Species: Blastococcus saxobsidens (50%)
2 1116 bp 70.43 5.20 70.43
sw_8_scaffold_24073
Species: Isoptericola variabilis (50%)
2 2020 bp 72.67 8.76 90.00
sw_8_scaffold_10170
Species: Streptomyces cyaneogriseus (50%)
2 1497 bp 74.88 10.02 90.58
sw_8_scaffold_12709
Species: RBG_16_Actinobacteria_68_21_curated (50%)
2 1288 bp 73.21 7.53 86.18
sw_8_scaffold_20519
Species: Frankia sp. EuI1c (50%)
2 1626 bp 71.96 9.78 100.18
sw_8_scaffold_18249
Species: Conexibacter woesei (50%)
2 1003 bp 71.39 7.78 99.00
sw_8_scaffold_10418
Species: Streptomyces venezuelae (50%)
2 1474 bp 71.17 9.97 64.72
sw_8_scaffold_22231
Species: Kribbella flavida (50%)
2 1423 bp 71.89 9.14 89.39
sw_8_scaffold_11342
Species: Micromonospora sp. M42 (50%)
2 1394 bp 69.51 8.18 88.45
sw_8_scaffold_34767
Species: Streptomyces sp. SPB74 (50%)
2 1086 bp 69.06 8.47 84.53
sw_8_scaffold_9739
Species: Micrococcus luteus (50%)
2 1539 bp 70.37 8.19 90.84
sw_8_scaffold_6057
Species: Saccharomonospora marina (50%)
2 2094 bp 71.25 8.12 91.69
sw_8_scaffold_8827
Species: Mycobacterium thermoresistibile (50%)
2 1649 bp 70.59 10.07 87.14
sw_8_scaffold_29500
Species: Actinoplanes sp. SE50/110 (50%)
2 1188 bp 71.04 6.99 105.05
sw_8_scaffold_10448
Species: Candidatus Microthrix parvicella (50%)
2 1471 bp 74.78 10.61 80.15
sw_8_scaffold_13214
Species: Saccharopolyspora erythraea (50%)
2 1857 bp 74.31 10.77 102.75
sw_8_scaffold_11377
Species: BJP_08E140C01_Actinomycetales_67_18 (50%)
2 1391 bp 71.96 8.84 98.35
sw_8_scaffold_29574
Species: Mycobacterium hassiacum (50%)
2 1228 bp 74.27 9.04 86.97
sw_8_scaffold_16224
Species: Cryptosporangium arvum (50%)
2 1091 bp 70.30 9.90 92.67
sw_8_scaffold_30894
Species: Acidothermus cellulolyticus (50%)
2 1127 bp 72.67 8.43 97.69
sw_8_scaffold_10938
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1429 bp 69.91 8.12 99.09
sw_8_scaffold_14400
Species: Thermomonospora curvata (50%)
2 1182 bp 68.36 7.36 76.40
sw_8_scaffold_22528
Species: RBG_16_Actinobacteria_67_10_curated (50%)
2 1254 bp 68.34 8.21 103.59
sw_8_scaffold_30966
Species: Blastococcus saxobsidens (50%)
2 1640 bp 71.46 11.34 57.99
sw_8_scaffold_10725
Species: Mycobacterium rhodesiae (50%)
2 1447 bp 70.91 8.50 93.50
sw_8_scaffold_4505
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 2546 bp 71.56 7.70 94.15
sw_8_scaffold_15803
Species: Frankia sp. QA3 (50%)
2 1111 bp 74.89 10.26 99.37
sw_8_scaffold_35315
Species: Thermomonospora curvata (50%)
2 1154 bp 73.66 10.23 99.57
sw_8_scaffold_7512
Species: Micromonospora carbonacea (50%)
2 1831 bp 70.67 8.90 89.95
sw_8_scaffold_22634
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1367 bp 72.20 7.90 79.66
sw_8_scaffold_14203
Species: Candidatus Microthrix parvicella (50%)
2 1887 bp 70.32 10.33 100.16
sw_8_scaffold_10752
Species: Saccharomonospora xinjiangensis (50%)
2 1445 bp 70.31 7.75 96.54
sw_8_scaffold_13750
Species: Blastococcus saxobsidens (50%)
2 1222 bp 72.34 9.00 76.35
sw_8_scaffold_13067
Species: Mycobacterium leprae (50%)
2 1264 bp 71.12 7.12 80.46
sw_8_scaffold_27825
Species: RBG_16_Actinobacteria_64_13_curated (50%)
2 1137 bp 73.18 10.99 98.42
sw_8_scaffold_25651
Species: Streptomyces griseoaurantiacus (50%)
2 1242 bp 71.10 7.73 94.69
sw_8_scaffold_14000
Species: Frankia sp. EuI1c (50%)
2 1207 bp 72.41 10.60 80.53
sw_8_scaffold_6630
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1978 bp 67.34 8.24 98.43
sw_8_scaffold_13316
Species: Saccharothrix espanaensis (50%)
2 1250 bp 71.68 8.72 93.60
sw_8_scaffold_32618
Species: Frankia sp. EAN1pec (50%)
2 1118 bp 68.60 8.14 82.65
sw_8_scaffold_7101
Species: Rhodococcus aetherivorans (50%)
2 1901 bp 70.80 9.57 100.05
Displaying items 51-100 of 151 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.