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sw_8_scaffold_17899_2

Organism: SW_8_Bacteroidetes_43_5

partial RP 23 / 55 BSCG 21 / 51 ASCG 2 / 38 MC: 1
Location: comp(234..785)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily id=3819916 bin=GWF2_Bacteroidetes_43_63 species=Pedobacter saltans genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_63 organism_group=Bacteroidetes organism_desc=a77 similarity UNIREF
DB: UNIREF100
  • Identity: 50.0
  • Coverage: 180.0
  • Bit_score: 181
  • Evalue 9.70e-43
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=GWF2_Bacteroidetes_43_63_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 49.7
  • Coverage: 179.0
  • Bit_score: 181
  • Evalue 1.40e-42
RNA polymerase, sigma-24 subunit, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 51.5
  • Coverage: 169.0
  • Bit_score: 173
  • Evalue 5.70e-41

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Taxonomy

GWF2_Bacteroidetes_43_63_curated → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 552
ATGACGGATTGCCGGCAACTGGTACAAAAATGCATCAAAGGTCACCGCAAGTTCCAAAAGGAGCTCTACGATTGCTATGCCAGTAAGATGCTGGGAATCTGCATGCGCTACGCAAAAGATAAATTCGAAGCTGAAGACTACTTGCAAGAAGGATTTATCAAAGTATTTAAAAACCTTAAGTATTTAGAAAAACCGGATCAACTTGAGGGATGGATGCGTACCATCATGATCAATACTGCCCTGGAACGTATCAGAAAGGAAAAACATCACGATAACAACGTTGAATTAGGAGATAACACGGATCTTGAAGTAAGTGATGATGCTATCGAACACTTGAATCAAGAGGCATTGTTAAAGATTATTCAATCGCTTCCCTCCGGGTTCAGGACCGTATTTAACATGTATGCAATTGAAGGGTATTCCCATAAGGAAATTGGATCAATGCTGGGCATTACGGAAGGTACTTCAAAATCTCAGTTTGCCAGGGCTAGGAAGCTTTTACAAGAAAAGGTTAATCAATTGGATCAAGCAGCAATAAAACATTTAGCATGA
PROTEIN sequence
Length: 184
MTDCRQLVQKCIKGHRKFQKELYDCYASKMLGICMRYAKDKFEAEDYLQEGFIKVFKNLKYLEKPDQLEGWMRTIMINTALERIRKEKHHDNNVELGDNTDLEVSDDAIEHLNQEALLKIIQSLPSGFRTVFNMYAIEGYSHKEIGSMLGITEGTSKSQFARARKLLQEKVNQLDQAAIKHLA*