ggKbase home page
Advanced Search
Search Help

SW_8_Bacteroidetes_43_5

In projects: SW_8

Consensus taxonomy: Bacteroidetes  →  Bacteria

Taxonomy override: Bacteroidetes

Metagenomic Context

Parent: SW_8_UNK

Properties

Avg. coverage: 5.19 Longest contig: 7.87 Kbp Bin length: 1.19 Mbp GC content: 43.46 %
Contigs count: 620 Features count: 1552 rRNAs count: 0 tRNAs count: 7

Genome completeness

partial RP 23 / 55 BSCG 21 / 51 ASCG 2 / 38 MC: 1
Displaying items 251-300 of 620 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_8_scaffold_13555
Species: BJP_08E140C01_Bacteriodales_41_10 (50%)
2 1234 bp 43.68 5.19 81.69
sw_8_scaffold_8153
Species: Sporocytophaga myxococcoides (50%)
2 1737 bp 41.85 5.07 81.69
sw_8_scaffold_24890
Species: Phaeodactylibacter xiamenensis (50%)
2 1779 bp 42.50 5.12 81.79
sw_8_scaffold_9305
Species: Pontibacter korlensis (50%)
2 1590 bp 47.48 3.96 81.89
sw_8_scaffold_10021
Phylum: Bacteroidetes (50%)
4 2227 bp 45.31 4.45 81.90
sw_8_scaffold_9088
Phylum: Bacteroidetes (71.43%)
7 3449 bp 43.14 4.99 81.94
sw_8_scaffold_8557
Phylum: Bacteroidetes (66.67%)
3 1681 bp 45.69 5.53 82.09
sw_8_scaffold_16597
Class: Bacteroidia (66.67%)
3 1679 bp 42.47 6.31 82.19
sw_8_scaffold_34366
Phylum: Bacteroidetes (100%)
3 1080 bp 40.28 4.91 82.22
sw_8_scaffold_14520
Order: Sphingobacteriales (50%)
4 1689 bp 47.19 4.85 82.24
sw_8_scaffold_11194
Species: Chryseobacterium indologenes (50%)
2 1406 bp 43.81 4.69 82.36
sw_8_scaffold_4099
Order: Sphingobacteriales (50%)
4 3283 bp 42.10 5.88 82.42
sw_8_scaffold_3490
Phylum: Bacteroidetes (100%)
3 2996 bp 44.29 5.31 82.51
sw_8_scaffold_8632
Phylum: Bacteroidetes (66.67%)
3 1672 bp 41.93 4.84 82.54
sw_8_scaffold_9332
Order: Cytophagales (50%)
4 2616 bp 45.80 4.85 82.57
sw_8_scaffold_16538
Order: Sphingobacteriales (66.67%)
3 1515 bp 42.38 6.67 82.57
sw_8_scaffold_9369
Class: Flavobacteriia (50%)
4 1583 bp 40.11 5.18 82.63
sw_8_scaffold_8345
Species: Lacinutrix sp. 5H-3-7-4 (50%)
2 1710 bp 39.77 3.51 82.63
sw_8_scaffold_9852
Species: Kordia algicida (50%)
2 1528 bp 44.37 5.04 82.66
sw_8_scaffold_16119
Order: Sphingobacteriales (66.67%)
3 1952 bp 42.67 5.64 82.68
sw_8_scaffold_12919
Species: GWF2_Bacteroidetes_33_38_curated (50%)
2 1922 bp 44.28 5.83 82.73
sw_8_scaffold_4419
Phylum: Bacteroidetes (100%)
3 2573 bp 42.13 5.91 82.78
sw_8_scaffold_9396
Species: Haliscomenobacter hydrossis (50%)
2 1580 bp 41.71 4.94 82.78
sw_8_scaffold_15955
Phylum: Bacteroidetes (66.67%)
3 1734 bp 46.37 5.65 82.87
sw_8_scaffold_10586
Species: Flavihumibacter sp. ZG627 (100%)
1 1458 bp 44.38 4.46 82.92
sw_8_scaffold_6522
Phylum: Bacteroidetes (100%)
3 1998 bp 48.25 5.41 83.03
sw_8_scaffold_8032
Species: GWE2_Bacteroidetes_29_8_curated (50%)
2 1755 bp 43.19 6.95 83.08
sw_8_scaffold_10241
Species: Flavihumibacter petaseus (50%)
2 1491 bp 42.59 4.29 83.10
sw_8_scaffold_16251
Species: GWF2_Bacteroidetes_43_11_curated (50%)
2 1090 bp 46.79 5.05 83.12
sw_8_scaffold_16308
Species: Flammeovirgaceae bacterium 311 (50%)
2 1577 bp 41.72 4.76 83.13
sw_8_scaffold_15978
Order: Cytophagales (50%)
4 1861 bp 44.55 6.66 83.18
sw_8_scaffold_11769
Species: RLO_Flavobacteria_35_11 (50%)
2 1359 bp 42.46 5.45 83.22
sw_8_scaffold_9373
Order: Flavobacteriales (50%)
4 2640 bp 47.16 5.64 83.30
sw_8_scaffold_5229
Phylum: Bacteroidetes (66.67%)
3 2312 bp 45.80 5.23 83.30
sw_8_scaffold_10680
Species: Pedobacter glucosidilyticus (50%)
2 1451 bp 48.04 4.55 83.32
sw_8_scaffold_10508
Phylum: Bacteroidetes (66.67%)
3 1465 bp 41.50 5.32 83.34
sw_8_scaffold_15917
Species: GWF2_Bacteroidetes_33_38_curated (50%)
2 1105 bp 41.45 5.61 83.35
sw_8_scaffold_11848
Species: Mucilaginibacter paludis (50%)
2 1353 bp 39.84 4.95 83.37
sw_8_scaffold_19906
Phylum: Bacteroidetes (75%)
4 2074 bp 43.15 5.35 83.46
sw_8_scaffold_12632
Order: Sphingobacteriales (66.67%)
3 1294 bp 42.89 5.26 83.46
sw_8_scaffold_9336
Species: RBG_13_Bacteroidetes_42_15_curated (50%)
2 2677 bp 39.75 5.42 83.49
sw_8_scaffold_16561
Species: Fibrisoma limi (50%)
2 1074 bp 40.88 5.96 83.52
sw_8_scaffold_6432
Phylum: Bacteroidetes (66.67%)
3 2018 bp 44.45 4.91 83.55
sw_8_scaffold_16747
Species: Pedobacter glucosidilyticus (50%)
2 1066 bp 48.22 3.56 83.58
sw_8_scaffold_16793
Phylum: Bacteroidetes (66.67%)
3 1937 bp 42.69 4.23 83.63
sw_8_scaffold_21673
Phylum: Bacteroidetes (80%)
5 2033 bp 40.04 4.33 83.67
sw_8_scaffold_3863
Class: Bacteroidia (75%)
4 2805 bp 47.06 5.95 83.96
sw_8_scaffold_16466
Species: Phaeodactylibacter xiamenensis (100%)
1 1079 bp 41.89 4.54 83.97
sw_8_scaffold_3793
Class: Bacteroidia (50%)
4 2839 bp 42.90 4.23 84.01
sw_8_scaffold_9312
Species: Flavihumibacter petaseus (50%)
2 1589 bp 44.37 5.66 84.20
Displaying items 251-300 of 620 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.