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sw_8_scaffold_1698_2

Organism: SW_8_Viridiplantae_55_9

partial RP 28 / 55 MC: 12 BSCG 18 / 51 MC: 4 ASCG 13 / 38 MC: 2
Location: comp(1250..2404)

Top 3 Functional Annotations

Value Algorithm Source
RNA helicase family protein n=1 Tax=Populus trichocarpa RepID=B9H2M0_POPTR similarity UNIREF
DB: UNIREF100
  • Identity: 33.3
  • Coverage: 369.0
  • Bit_score: 168
  • Evalue 1.00e-38
Helicase, C-terminal {ECO:0000313|EMBL:CAL54170.1}; TaxID=70448 species="Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus.;" source="Ost similarity UNIPROT
DB: UniProtKB
  • Identity: 34.5
  • Coverage: 359.0
  • Bit_score: 168
  • Evalue 1.50e-38
ATP-dependent helicase HrpB similarity KEGG
DB: KEGG
  • Identity: 31.7
  • Coverage: 259.0
  • Bit_score: 114
  • Evalue 5.00e-23

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Taxonomy

Ostreococcus tauri → Ostreococcus → Mamiellales → Mamiellophyceae → Chlorophyta → Viridiplantae

Sequences

DNA sequence
Length: 1155
ATGTCACAAAGCTCCAATCCGTTTGATCTCATCGCTCCTTGCTTGCGTTCACACGGCTGCGTTGTCATTCTCGCCGAGCCCGGCACAGACGTCACTGACTCACTGCCCGAGCACACGTTGCAAATCACTGGCTCTGAAACCCTTGAGCATCTTCGCAATGACCCTTTGCTCACCGAGTGCAACACGCTCGCACTCACAGATGCGCACTCACTTCGCACAGACAGCGATCTCGCGCTCTCGTTGCTTCTCAAGGCTCAGCAAGCTCGCAAATCCTCTCACTCCCACGATCTCGGCATCGCGGCGATCATTCGCTCGCAGAGCGCAATCGACCGCCTCTGTCGCTTCCTTGGGAACCCGGAAACCGAGCTCAGCAAGCATCATCGTGAGAATAAAGGCTCACTTAAACCTGTGATTGAGCTTCCACCAAGCCCACCACGCCCTGTGCGCGTCCGCTACCTTCACGAGCCCGTGCGTGACTACGTGGACGCCTGTGTGGATGTTGCAATCAGCCTCCACGCTGAGGAGAATGCTCGTGGCGATGTTCTTGCGTTCCTTCCTAGCGAAGCCGATGTGAGGCTCGCCCTCACGGCCGCCAGGGAGCGCGCTGAGAGCAGCGCGCTTGTGATGTGCCTATTCGAGGATCAACCGGACTGGCAGAAACGTGAAGCTTGTGTGCAGCACTCGAAGCCCAGAATTGTGCTCGCAACGCCTTTCGCTGAGTGCGATATCGCGATCGATGGCATCGTGCACGTGGTTGACAGCATGTTCTCTACGCAGTGGTTCTTTAACGCGTCGAAACGAGCGCACGTGCAGTGTACGCAACCAGTCGACAAGGCAACGGCGTATCAGCGCGCAACACGCGCTGGCAAAGAACAGATCGGGTCGCACAGCGGCATCTGCTACCGGATGTGCACGGAAAGCACGTTTGCAAACCTTCATGATCGCCCAAAACCGGGCGTGCAGGCAGATGAGCTCACACGGACTGTACTCACGATCAAAGGTCTTGGGATCGACAACCTCATGAACGTTGATTGGGTCGAGCCGCCTCCAGCTTCGCNNNNNNNNNNNNNNCCGCCTCCAGCTTCGCACATCACCCTTGCGCTCCAGAACCTGCACGCGCTCGGCGCAATCGATGACGACGGCAAGCTCACATAA
PROTEIN sequence
Length: 385
MSQSSNPFDLIAPCLRSHGCVVILAEPGTDVTDSLPEHTLQITGSETLEHLRNDPLLTECNTLALTDAHSLRTDSDLALSLLLKAQQARKSSHSHDLGIAAIIRSQSAIDRLCRFLGNPETELSKHHRENKGSLKPVIELPPSPPRPVRVRYLHEPVRDYVDACVDVAISLHAEENARGDVLAFLPSEADVRLALTAARERAESSALVMCLFEDQPDWQKREACVQHSKPRIVLATPFAECDIAIDGIVHVVDSMFSTQWFFNASKRAHVQCTQPVDKATAYQRATRAGKEQIGSHSGICYRMCTESTFANLHDRPKPGVQADELTRTVLTIKGLGIDNLMNVDWVEPPPASXXXXXPPPASHITLALQNLHALGAIDDDGKLT*