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SW_8_Viridiplantae_55_9

SW_8_Eukaryota_55_9
In projects: SW_8

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_8_UNK

Properties

Avg. coverage: 8.92 Longest contig: 26.06 Kbp Bin length: 2.69 Mbp GC content: 55.42 %
Contigs count: 661 Features count: 2462 rRNAs count: 0 tRNAs count: 1

Genome completeness

partial RP 28 / 55 MC: 12 BSCG 18 / 51 MC: 4 ASCG 13 / 38 MC: 2
Displaying items 451-500 of 661 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_8_scaffold_11404
Species: Micromonas pusilla (50%)
2 1389 bp 56.37 8.86 51.40
sw_8_scaffold_10486
Species: Ostreococcus tauri (50%)
2 2383 bp 61.64 9.53 98.07
sw_8_scaffold_17861
Species: Selaginella moellendorffii (50%)
2 1813 bp 55.38 8.33 59.24
sw_8_scaffold_9104
Species: Medicago truncatula (50%)
2 2085 bp 60.62 8.87 45.90
sw_8_scaffold_10489
Species: Coccomyxa subellipsoidea (50%)
2 2472 bp 58.33 7.97 89.20
sw_8_scaffold_6571
Species: Hordeum vulgare (50%)
2 1988 bp 56.19 9.46 60.66
sw_8_scaffold_14868
Species: Monoraphidium neglectum (50%)
2 1157 bp 53.15 10.63 89.97
sw_8_scaffold_17172
Species: Micromonas sp. RCC299 (50%)
2 1048 bp 65.08 7.73 89.89
sw_8_scaffold_17634
Species: Chlamydomonas reinhardtii (50%)
2 2107 bp 53.87 7.69 80.73
sw_8_scaffold_9108
Species: Auxenochlorella protothecoides (50%)
2 1616 bp 54.46 8.85 34.90
sw_8_scaffold_12336
Species: Brassica rapa (50%)
2 2309 bp 59.03 9.53 81.46
sw_8_scaffold_14644
Species: Auxenochlorella protothecoides (50%)
2 2263 bp 50.68 7.73 41.89
sw_8_scaffold_7733
Species: Micromonas sp. RCC299 (50%)
2 2446 bp 55.93 9.24 80.83
sw_8_scaffold_9808
Species: Micromonas sp. RCC299 (50%)
2 1531 bp 56.04 7.64 83.08
sw_8_scaffold_8657
Species: Micromonas sp. RCC299 (50%)
2 2508 bp 53.99 8.13 98.33
sw_8_scaffold_16953
Species: Oryza punctata (50%)
2 1057 bp 53.07 8.04 95.93
sw_8_scaffold_13959
Species: Chlorella variabilis (50%)
2 1210 bp 63.31 7.93 73.64
sw_8_scaffold_10045
Species: Coccomyxa subellipsoidea (50%)
2 1509 bp 59.84 8.61 73.36
sw_8_scaffold_2653
Species: Micromonas sp. RCC299 (50%)
2 3532 bp 56.77 9.14 86.98
sw_8_scaffold_4288
Species: Ostreococcus tauri (50%)
2 3309 bp 54.43 8.98 62.83
sw_8_scaffold_6592
Species: Coccomyxa subellipsoidea (100%)
2 1985 bp 51.89 9.32 32.49
sw_8_scaffold_7975
Species: Tetraselmis sp. GSL018 (50%)
2 2513 bp 59.57 7.41 82.13
sw_8_scaffold_16273
Species: Coccomyxa subellipsoidea (50%)
2 1089 bp 60.61 8.63 72.18
sw_8_scaffold_17195
Species: Ostreococcus tauri (100%)
2 1573 bp 64.78 8.96 99.36
sw_8_scaffold_7287
Species: Triticum aestivum (50%)
2 1867 bp 54.63 11.19 71.51
sw_8_scaffold_7057
Species: Ostreococcus tauri (100%)
2 1908 bp 54.04 8.86 55.82
sw_8_scaffold_10978
Species: Chlamydomonas reinhardtii (50%)
2 1426 bp 65.08 8.56 82.47
sw_8_scaffold_3891
Species: Ostreococcus tauri (50%)
2 2794 bp 52.40 8.95 78.92
sw_8_scaffold_2179
Species: Capsella rubella (50%)
2 3960 bp 54.95 8.91 96.36
sw_8_scaffold_6832
Species: Triticum aestivum (50%)
2 1944 bp 56.02 8.64 49.07
sw_8_scaffold_14437
Species: Chlamydomonas reinhardtii (50%)
2 1180 bp 58.22 7.88 77.54
sw_8_scaffold_23610
Species: Vitis vinifera (50%)
2 1236 bp 62.54 8.17 80.10
sw_8_scaffold_3543
Species: Chlorella variabilis (50%)
2 2967 bp 60.23 9.27 79.37
sw_8_scaffold_11443
Species: Physcomitrella patens (50%)
2 1386 bp 52.67 9.60 69.05
sw_8_scaffold_14209
Species: Ostreococcus tauri (50%)
2 1870 bp 52.89 6.68 55.67
sw_8_scaffold_12367
Species: Tetraselmis sp. GSL018 (50%)
2 1313 bp 58.04 9.06 97.33
sw_8_scaffold_5916
Species: Micromonas pusilla (50%)
2 2129 bp 53.50 8.36 96.67
sw_8_scaffold_8451
Species: Chlorella variabilis (50%)
2 1695 bp 52.21 7.73 59.82
sw_8_scaffold_12830
Species: Physcomitrella patens (50%)
2 2423 bp 57.94 8.87 46.18
sw_8_scaffold_1744
Species: Ostreococcus tauri (50%)
2 4569 bp 53.56 9.50 74.33
sw_8_scaffold_18130
Species: Volvox carteri (50%)
2 1008 bp 61.11 9.42 87.20
sw_8_scaffold_13298
Species: Tetraselmis sp. GSL018 (50%)
2 1251 bp 57.79 8.63 83.69
sw_8_scaffold_7306
Species: Coccomyxa subellipsoidea (100%)
2 1862 bp 54.24 8.70 80.40
sw_8_scaffold_9841
Species: Bathycoccus prasinos (50%)
2 1529 bp 58.08 9.03 85.15
sw_8_scaffold_4773
Species: Araucaria cunninghamii (50%)
2 2456 bp 57.74 9.00 88.07
sw_8_scaffold_5002
Species: Micromonas pusilla (50%)
2 2919 bp 53.85 7.78 73.69
sw_8_scaffold_13991
Species: Ricinus communis (50%)
2 1208 bp 55.22 8.11 89.16
sw_8_scaffold_17678
Species: Araucaria cunninghamii (50%)
2 1026 bp 61.01 6.34 76.02
sw_8_scaffold_8924
Species: Tetraselmis sp. GSL018 (50%)
2 2938 bp 56.67 7.83 94.04
sw_8_scaffold_8233
Species: Physcomitrella patens (50%)
2 1726 bp 55.10 7.01 99.07
Displaying items 451-500 of 661 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.