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SW_8_Viridiplantae_55_9

SW_8_Eukaryota_55_9
In projects: SW_8

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_8_UNK

Properties

Avg. coverage: 8.92 Longest contig: 26.06 Kbp Bin length: 2.69 Mbp GC content: 55.42 %
Contigs count: 661 Features count: 2462 rRNAs count: 0 tRNAs count: 1

Genome completeness

partial RP 28 / 55 MC: 12 BSCG 18 / 51 MC: 4 ASCG 13 / 38 MC: 2
Displaying items 201-250 of 661 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_8_scaffold_9770
Species: Micromonas pusilla (50%)
2 1536 bp 54.17 9.96 96.88
sw_8_scaffold_12306
Species: Micromonas sp. RCC299 (50%)
2 2559 bp 55.76 8.83 55.33
sw_8_scaffold_13000
Species: Coccomyxa subellipsoidea (50%)
2 1268 bp 53.08 8.36 94.64
sw_8_scaffold_14153
Species: Monoraphidium neglectum (50%)
2 1198 bp 53.67 9.60 82.14
sw_8_scaffold_3506
Species: Cucumis sativus (50%)
2 2986 bp 56.63 8.81 98.66
sw_8_scaffold_13696
Species: Physcomitrella patens (50%)
2 2222 bp 57.65 8.19 90.46
sw_8_scaffold_11392
Species: Ostreococcus 'lucimarinus' (50%)
2 1390 bp 61.08 7.41 85.90
sw_8_scaffold_29636
Species: Micromonas sp. RCC299 (50%)
2 1309 bp 55.16 7.56 69.21
sw_8_scaffold_5170
Species: Physcomitrella patens (50%)
2 2327 bp 59.09 7.09 75.68
sw_8_scaffold_9549
Species: Micromonas sp. RCC299 (50%)
2 2510 bp 56.77 8.57 56.53
sw_8_scaffold_13237
Species: Coccomyxa subellipsoidea (50%)
2 1789 bp 57.63 7.66 94.07
sw_8_scaffold_1439
Species: Setaria italica (50%)
2 7548 bp 52.80 9.46 92.89
sw_8_scaffold_18076
Species: Genlisea aurea (50%)
2 1010 bp 56.14 7.72 93.27
sw_8_scaffold_2162
Species: Micromonas pusilla (50%)
2 3983 bp 48.63 6.10 71.33
sw_8_scaffold_4714
Species: Zea mays (50%)
2 2474 bp 55.38 9.18 75.79
sw_8_scaffold_5636
Species: Micromonas pusilla (50%)
2 2202 bp 57.18 10.31 92.37
sw_8_scaffold_16007
Species: Glycine max (50%)
2 1101 bp 54.86 8.72 41.69
sw_8_scaffold_18083
Species: Monoraphidium neglectum (50%)
2 1010 bp 58.61 6.83 78.42
sw_8_scaffold_2751
Species: Micromonas pusilla (50%)
2 3463 bp 57.38 8.69 82.21
sw_8_scaffold_12554
Species: Micromonas sp. RCC299 (50%)
2 1299 bp 60.97 8.39 104.62
sw_8_scaffold_10251
Species: Triticum aestivum (50%)
2 1490 bp 56.17 7.85 106.91
sw_8_scaffold_12787
Species: Ostreococcus tauri (50%)
2 1975 bp 48.86 5.82 49.22
sw_8_scaffold_10483
Species: Physcomitrella patens (50%)
2 1467 bp 55.62 6.88 55.01
sw_8_scaffold_11174
Species: Chlamydomonas reinhardtii (50%)
2 1408 bp 57.32 10.09 96.31
sw_8_scaffold_11404
Species: Micromonas pusilla (50%)
2 1389 bp 56.37 8.86 51.40
sw_8_scaffold_10486
Species: Ostreococcus tauri (50%)
2 2383 bp 61.64 9.53 98.07
sw_8_scaffold_17861
Species: Selaginella moellendorffii (50%)
2 1813 bp 55.38 8.33 59.24
sw_8_scaffold_9104
Species: Medicago truncatula (50%)
2 2085 bp 60.62 8.87 45.90
sw_8_scaffold_10489
Species: Coccomyxa subellipsoidea (50%)
2 2472 bp 58.33 7.97 89.20
sw_8_scaffold_6571
Species: Hordeum vulgare (50%)
2 1988 bp 56.19 9.46 60.66
sw_8_scaffold_14868
Species: Monoraphidium neglectum (50%)
2 1157 bp 53.15 10.63 89.97
sw_8_scaffold_17172
Species: Micromonas sp. RCC299 (50%)
2 1048 bp 65.08 7.73 89.89
sw_8_scaffold_17634
Species: Chlamydomonas reinhardtii (50%)
2 2107 bp 53.87 7.69 80.73
sw_8_scaffold_9108
Species: Auxenochlorella protothecoides (50%)
2 1616 bp 54.46 8.85 34.90
sw_8_scaffold_12336
Species: Brassica rapa (50%)
2 2309 bp 59.03 9.53 81.46
sw_8_scaffold_14644
Species: Auxenochlorella protothecoides (50%)
2 2263 bp 50.68 7.73 41.89
sw_8_scaffold_7733
Species: Micromonas sp. RCC299 (50%)
2 2446 bp 55.93 9.24 80.83
sw_8_scaffold_9808
Species: Micromonas sp. RCC299 (50%)
2 1531 bp 56.04 7.64 83.08
sw_8_scaffold_8657
Species: Micromonas sp. RCC299 (50%)
2 2508 bp 53.99 8.13 98.33
sw_8_scaffold_16953
Species: Oryza punctata (50%)
2 1057 bp 53.07 8.04 95.93
sw_8_scaffold_13959
Species: Chlorella variabilis (50%)
2 1210 bp 63.31 7.93 73.64
sw_8_scaffold_10045
Species: Coccomyxa subellipsoidea (50%)
2 1509 bp 59.84 8.61 73.36
sw_8_scaffold_2653
Species: Micromonas sp. RCC299 (50%)
2 3532 bp 56.77 9.14 86.98
sw_8_scaffold_4288
Species: Ostreococcus tauri (50%)
2 3309 bp 54.43 8.98 62.83
sw_8_scaffold_6592
Species: Coccomyxa subellipsoidea (100%)
2 1985 bp 51.89 9.32 32.49
sw_8_scaffold_7975
Species: Tetraselmis sp. GSL018 (50%)
2 2513 bp 59.57 7.41 82.13
sw_8_scaffold_16273
Species: Coccomyxa subellipsoidea (50%)
2 1089 bp 60.61 8.63 72.18
sw_8_scaffold_17195
Species: Ostreococcus tauri (100%)
2 1573 bp 64.78 8.96 99.36
sw_8_scaffold_7287
Species: Triticum aestivum (50%)
2 1867 bp 54.63 11.19 71.51
sw_8_scaffold_7057
Species: Ostreococcus tauri (100%)
2 1908 bp 54.04 8.86 55.82
Displaying items 201-250 of 661 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.