ggKbase | organisms

Consensus taxonomy: Oscillatoriophycideae → Cyanobacteria → Bacteria

Taxonomy override: Cyanobacteria

Metagenomic Context

Parent: SW_9_UNK

Properties

Avg. coverage: 5.59 Longest contig: 3.48 Kbp Bin length: 313.50 Kbp GC content: 46.77 %

Contigs count: 222 Features count: 463 rRNAs count: 1 tRNAs count: 4

Genome completeness

partial RP 9 / 55 BSCG 11 / 51 ASCG 1 / 38

Displaying items 101-150 of 222 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_9_scaffold_19452 Species: Oscillatoriales cyanobacterium JSC-12 (50%)	2	1097 bp	49.68	3.28	50.05
sw_9_scaffold_12540 Species: Crinalium epipsammum (50%)	2	1980 bp	46.77	4.85	38.94
sw_9_scaffold_14614 Species: Crinalium epipsammum (50%)	2	1319 bp	48.90	3.94	59.59
sw_9_scaffold_24714 Species: Coleofasciculus chthonoplastes (50%)	2	1984 bp	46.88	6.20	62.30
sw_9_scaffold_17382 Species: Cyanothece sp. PCC 7822 (50%)	2	1181 bp	48.01	5.08	61.98
sw_9_scaffold_16231 Species: Cyanothece sp. PCC 7424 (50%)	2	1235 bp	49.47	5.02	77.98
sw_9_scaffold_27651 Species: Synechococcus sp. PCC 7335 (50%)	2	1422 bp	49.09	5.13	84.60
sw_9_scaffold_8732 Species: Synechococcus sp. PCC 7335 (50%)	2	1813 bp	46.66	4.58	73.80
sw_9_scaffold_50842 Species: Dactylococcopsis salina (50%)	2	1034 bp	47.68	3.58	85.30
sw_9_scaffold_16702 Species: Gloeocapsa sp. PCC 7428 (50%)	2	1211 bp	49.38	5.20	84.23
sw_9_scaffold_15785 Species: Coleofasciculus chthonoplastes (50%)	2	1257 bp	48.21	4.61	68.97
sw_9_scaffold_18551 Species: Microcystis aeruginosa (50%)	2	1131 bp	42.79	4.86	87.27
sw_9_scaffold_18553 Species: Microcoleus sp. PCC 7113 (50%)	2	1131 bp	48.72	5.13	83.55
sw_9_scaffold_8750 Species: Halothece sp. PCC 7418 (50%)	2	1811 bp	49.53	4.31	79.68
sw_9_scaffold_7830 Species: Lyngbya sp. PCC 8106 (50%)	2	1933 bp	43.87	6.36	92.50
sw_9_scaffold_20636 Species: Lyngbya aestuarii (50%)	2	1054 bp	43.55	6.45	51.52
sw_9_scaffold_20409 Species: Coleofasciculus chthonoplastes (50%)	2	1061 bp	41.66	4.15	62.49
sw_9_scaffold_17656 Species: Coleofasciculus chthonoplastes (50%)	2	1168 bp	45.46	5.99	89.38
sw_9_scaffold_19964 Species: Lyngbya aestuarii (50%)	2	1078 bp	47.12	5.47	73.75
sw_9_scaffold_22277 Species: Cyanothece sp. ATCC 51142 (50%)	2	1000 bp	50.50	5.90	87.60
sw_9_scaffold_20897 Species: Coleofasciculus chthonoplastes (50%)	2	1045 bp	47.27	4.88	86.70
sw_9_scaffold_20207 Species: Microcoleus sp. PCC 7113 (50%)	2	1069 bp	48.08	5.33	90.65
sw_9_scaffold_35705 Species: Crinalium epipsammum (50%)	2	1233 bp	51.66	4.14	102.43
sw_9_scaffold_9247 Species: Cyanothece sp. PCC 7424 (50%)	2	1750 bp	46.51	4.06	91.89
sw_9_scaffold_22283 Species: Crinalium epipsammum (50%)	2	1000 bp	46.70	4.70	81.00
sw_9_scaffold_20671 Species: Microcoleus sp. PCC 7113 (50%)	2	1053 bp	45.20	4.27	100.29
sw_9_scaffold_11688 Species: Halothece sp. PCC 7418 (100%)	2	1518 bp	50.79	4.35	85.97
sw_9_scaffold_16757 Species: Microcoleus sp. PCC 7113 (50%)	2	1209 bp	43.34	4.71	93.05
sw_9_scaffold_19291 Species: Chroococcales cyanobacterium CENA595 (50%)	2	1104 bp	47.83	5.25	81.25
sw_9_scaffold_16758 Species: Coleofasciculus chthonoplastes (50%)	2	1209 bp	46.07	5.21	33.75
sw_9_scaffold_16759 Species: Microcoleus sp. PCC 7113 (50%)	2	1209 bp	48.39	4.96	81.64
sw_9_scaffold_21369 Species: Coleofasciculus chthonoplastes (100%)	2	1029 bp	44.61	3.98	94.17
sw_9_scaffold_9716 Species: Trichodesmium erythraeum (50%)	2	1701 bp	42.68	4.76	62.08
sw_9_scaffold_18605 Species: Crinalium epipsammum (50%)	2	1129 bp	48.89	4.52	69.62
sw_9_scaffold_19528 Species: Moorea producens (50%)	2	1094 bp	50.00	5.76	89.40
sw_9_scaffold_9029 Species: Microcystis aeruginosa (50%)	2	1776 bp	41.78	6.19	42.06
sw_9_scaffold_9720 Species: Geitlerinema sp. PCC 7407 (50%)	2	1700 bp	45.59	4.76	85.41
sw_9_scaffold_14926 Species: Coleofasciculus chthonoplastes (50%)	2	1301 bp	49.12	5.53	87.16
sw_9_scaffold_12622 Species: Planktothrix agardhii (50%)	2	1448 bp	46.20	4.56	65.47
sw_9_scaffold_15389 Species: Moorea producens (50%)	2	1277 bp	45.26	6.42	40.88
sw_9_scaffold_11012 Species: Cyanothece sp. PCC 7424 (50%)	2	1577 bp	50.03	4.82	95.88
sw_9_scaffold_19081 Species: Gloeocapsa sp. PCC 7428 (50%)	2	1112 bp	50.18	6.29	39.93
sw_9_scaffold_9732 Species: Coleofasciculus chthonoplastes (50%)	2	1699 bp	49.09	6.59	64.45
sw_9_scaffold_21386 Species: Halothece sp. PCC 7418 (50%)	2	1029 bp	49.66	5.64	88.92
sw_9_scaffold_13784 Species: Microcystis aeruginosa (50%)	2	1368 bp	45.61	5.63	98.90
sw_9_scaffold_18854 Species: Coleofasciculus chthonoplastes (50%)	2	1121 bp	48.97	5.44	92.33
sw_9_scaffold_7432 Species: Oscillatoriales cyanobacterium JSC-12 (50%)	2	1987 bp	45.29	5.39	52.24
sw_9_scaffold_11253 Species: Coleofasciculus chthonoplastes (100%)	2	1554 bp	48.26	4.12	79.73
sw_9_scaffold_19088 Species: Moorea producens (50%)	2	1111 bp	47.34	5.22	87.76
sw_9_scaffold_20930 Species: [Oscillatoria] sp. PCC 6506 (50%)	2	2477 bp	45.50	5.01	47.72

Displaying items 101-150 of 222 in total

SW_9_Oscillatoriophycideae_47_5

SW_9_Oscillatoriophycideae_47_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_9_Oscillatoriophycideae_47_5

SW_9_Oscillatoriophycideae_47_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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