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AMDSBA1_17

Alias: AMDSBA1_C16

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Displaying items 61-85 of 85 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_17_61
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(56023..56712)
DNA (690bp) protein (230aa)
PYP-like sensor domain (PAS domain) (db=superfamily db_id=SSF55785 from=10 to=125 evalue=4.0e-10)
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=163 to=190 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=HMMSmart db_id=SM00421 from=146 to=203 evalue=7.4e-22 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
C-terminal effector domain of the bipartite response regulators (db=superfamily db_id=SSF46894 from=127 to=213 evalue=1.1e-20 interpro_id=IPR016032 interpro_description=Signal transduction response regulator, C-terminal effector GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Cellular Component: intracellular (GO:0005622), Biological Process:
AMDSBA1_17_62
unknown

Not on your lists

comp(57035..57484)
DNA (450bp) protein (150aa)
(db=HMMPfam db_id=PF01814 from=5 to=62 evalue=0.0001 interpro_id=IPR012312 interpro_description=Haemerythrin/HHE cation-binding motif)
(db=HMMPfam db_id=PF01814 from=72 to=122 evalue=0.013 interpro_id=IPR012312 interpro_description=Haemerythrin/HHE cation-binding motif)
AMDSBA1_17_63
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57805..58305
DNA (501bp) protein (167aa)
(2Fe-2S)-binding domain-containing protein
XDH protein n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CDS9_CAPO3 (db=UNIREF evalue=1.2e-24 bit_score=118.6 identity=39.2 coverage=95.20958083832335)
2FE2S_FER_1 (db=PatternScan db_id=PS00197 from=42 to=50 evalue=0.0 interpro_id=IPR006058 interpro_description=2Fe-2S ferredoxin, iron-sulphur binding site GO=Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537))
XANTHINE DEHYDROGENASE (db=HMMPanther db_id=PTHR11908 from=6 to=159 evalue=1.1e-58)
AMDSBA1_17_64
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

58302..60614
DNA (2313bp) protein (771aa)
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GFV5_9DELT (db=UNIREF evalue=3.9e-182 bit_score=644.0 identity=45.2 coverage=97.14656290531777)
seg (db=Seg db_id=seg from=663 to=675)
AMDSBA1_17_65
R_NC10_66_22, NC10, Bacteria

Not on your lists

60611..61600
DNA (990bp) protein (330aa)
aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein
4-hydroxybenzoyl-CoA reductase subunit beta n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YFI8_9DELT (db=UNIREF evalue=7.6e-26 bit_score=123.6 identity=34.4 coverage=65.45454545454545)
FAD-binding domain (db=superfamily db_id=SSF56176 from=5 to=214 evalue=2.2e-49 interpro_id=IPR016166 interpro_description=FAD-binding, type 2 GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: oxidoreductase activity, acting on CH-OH group of donors (GO:0016614), Molecular Function: flavin adenine dinucleotide binding (GO:0050660), Biological Process: oxidation-reduction process (GO:0055114))
(db=HMMPfam db_id=PF00941 from=5 to=212 evalue=3.0e-36 interpro_id=IPR002346 interpro_description=Molybdopterin dehydrogenase, FAD-binding GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_17_66
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

Not on your lists

61597..62823
DNA (1227bp) protein (409aa)
LeuC_1; 3-isopropylmalate dehydratase large subunit
3-isopropylmalate dehydratase large subunit 3 n=2 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L5P1_9BACT (db=UNIREF evalue=1.1e-87 bit_score=329.3 identity=42.9 coverage=96.82151589242054)
seg (db=Seg db_id=seg from=382 to=389)
ACONITASE_1 (db=PatternScan db_id=PS00450 from=272 to=288 evalue=0.0 interpro_id=IPR018136 interpro_description=Aconitase family, 4Fe-4S cluster binding site)
AMDSBA1_17_67
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

62820..63332
DNA (513bp) protein (171aa)
3-isopropylmalate dehydratase small subunit (EC:4.2.1.33)
LEUD_arch: 3-isopropylmalate dehydratase, s (db=HMMTigr db_id=TIGR02087 from=10 to=164 evalue=6.2e-60 interpro_id=IPR011827 interpro_description=3-isopropylmalate dehydratase, small subunit, subgroup GO=Molecular Function: 3-isopropylmalate dehydratase activity (GO:0003861), Biological Process: leucine biosynthetic process (GO:0009098), Cellular Component: 3-isopropylmalate dehydratase complex (GO:0009316))
LeuD/IlvD-like (db=superfamily db_id=SSF52016 from=3 to=165 evalue=4.0e-39 interpro_id=IPR015928 interpro_description=Aconitase/3-isopropylmalate dehydratase, swivel GO=Biological Process: metabolic process (GO:0008152))
3-ISOPROPYLMALATE DEHYDRATASE (db=HMMPanther db_id=PTHR11670:SF2 from=34 to=158 evalue=2.8e-34)
AMDSBA1_17_68
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

63438..64718
DNA (1281bp) protein (427aa)
phenylacetate--CoA ligase (EC:6.2.1.30)
phenylacetate--CoA ligase (EC:6.2.1.30)
Acyl-CoA reductase n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GKT4_METPE (db=UNIREF evalue=1.1e-13 bit_score=83.6 identity=25.8 coverage=90.86651053864169)
seg (db=Seg db_id=seg from=337 to=349)
AMDSBA1_17_69
unknown

Not on your lists

64715..64939
DNA (225bp) protein (75aa)
64715..64939 + ( gc_cont=0.498)
AMDSBA1_17_70
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

64964..66208
DNA (1245bp) protein (415aa)
leuA3; 2-isopropylmalate synthase (EC:2.3.3.13)
(R)-citramalate synthase n=2 Tax=Halorhabdus RepID=F7PJH3_9EURY (db=UNIREF evalue=5.8e-31 bit_score=141.0 identity=30.1 coverage=88.43373493975903)
seg (db=Seg db_id=seg from=176 to=188)
Aldolase (db=superfamily db_id=SSF51569 from=14 to=312 evalue=9.5e-57)
AMDSBA1_17_71
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

66271..68055
DNA (1785bp) protein (595aa)
thiamine pyrophosphate binding domain-containing protein
thiamine pyrophosphate binding domain-containing protein
Indolepyruvate ferredoxin oxidoreductase n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SKN6_RHOPH (db=UNIREF evalue=2.7e-138 bit_score=498.0 identity=44.2 coverage=99.32773109243698)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=351 to=536 evalue=2.6e-30)
AMDSBA1_17_72
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68091..68966
DNA (876bp) protein (292aa)
pyruvate ferredoxin/flavodoxin oxidoreductase 4Fe-4S binding subunit
seg (db=Seg db_id=seg from=11 to=25)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=222 to=233 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=253 to=264 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
AMDSBA1_17_73
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

68951..70099
DNA (1149bp) protein (383aa)
2-oxoglutarate synthase (EC:1.2.7.3)
OorA subunit of 2-oxoglutarate:acceptor oxidoreductase n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PGE7_9PROT (db=UNIREF evalue=4.9e-77 bit_score=293.9 identity=42.3 coverage=96.60574412532638)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=1 to=260 evalue=9.1e-75)
seg (db=Seg db_id=seg from=58 to=71)
AMDSBA1_17_74
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

70096..70929
DNA (834bp) protein (278aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta
Thiamine pyrophosphate domain protein TPP-binding n=5 Tax=Rhodopseudomonas palustris RepID=B3QJ78_RHOPT (db=UNIREF evalue=1.1e-70 bit_score=272.3 identity=52.3 coverage=89.568345323741)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=13 to=270 evalue=2.3e-66)
seg (db=Seg db_id=seg from=93 to=107)
AMDSBA1_17_75
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

70932..71498
DNA (567bp) protein (189aa)
2-oxoacid:ferredoxin oxidoreductase, gamma subunit
2-oxoglutarate synthase subunit korC n=1 Tax=Archaeoglobus fulgidus DSM 4304 RepID=KORC_ARCFU (db=UNIREF evalue=8.8e-19 bit_score=99.4 identity=37.1 coverage=85.18518518518519)
seg (db=Seg db_id=seg from=124 to=137)
seg (db=Seg db_id=seg from=8 to=31)
AMDSBA1_17_76
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71476..72705
DNA (1230bp) protein (410aa)
hypothetical protein
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Burkholderia sp. YI23 RepID=G8MH89_9BURK (db=UNIREF evalue=2.7e-89 bit_score=334.7 identity=42.5 coverage=95.60975609756098)
CoA-transferase family III (CaiB/BaiF) (db=superfamily db_id=SSF89796 from=3 to=396 evalue=1.6e-137 interpro_id=IPR023606 interpro_description=CoA-transferase family III domain)
AMDSBA1_17_77
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72727..73509
DNA (783bp) protein (261aa)
2,3-dehydroadipyl-CoA hydratase
Enoyl-CoA hydratase n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q21BI3_RHOPB (db=UNIREF evalue=9.3e-27 bit_score=126.3 identity=33.5 coverage=93.48659003831418)
seg (db=Seg db_id=seg from=102 to=119)
ENOYL_COA_HYDRATASE (db=PatternScan db_id=PS00166 from=101 to=121 evalue=0.0 interpro_id=IPR018376 interpro_description=Enoyl-CoA hydratase/isomerase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
AMDSBA1_17_78
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

73538..74287
DNA (750bp) protein (250aa)
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
Putative uncharacterized protein n=1 Tax=Aspergillus nidulans FGSC A4 RepID=Q5BC44_EMENI (db=UNIREF evalue=7.5e-18 bit_score=96.7 identity=29.0 coverage=89.60000000000001)
seg (db=Seg db_id=seg from=218 to=230)
ADH_SHORT (db=PatternScan db_id=PS00061 from=141 to=169 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
AMDSBA1_17_79
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74326..74745
DNA (420bp) protein (140aa)
(db=HMMPfam db_id=PF01796 from=54 to=111 evalue=1.2e-12 interpro_id=IPR002878 interpro_description=Domain of unknown function DUF35, OB-fold, C-terminal)
(db=HMMPfam db_id=PF12172 from=22 to=46 evalue=8.4e-07 interpro_id=IPR022002 interpro_description=Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal)
PF01796 domain protein {ECO:0000313|EMBL:KCV67067.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchisept
hypothetical protein
AMDSBA1_17_80
Rhodococcus sp. EsD8, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

74742..75884
DNA (1143bp) protein (381aa)
thiolase
Lipid-transfer protein n=2 Tax=Rhodococcus erythropolis RepID=C3JV48_RHOER (db=UNIREF evalue=1.6e-14 bit_score=86.3 identity=23.2 coverage=88.18897637795276)
seg (db=Seg db_id=seg from=22 to=37)
3-KETOACYL-COA THIOLASE B (BETA- KETOTHIOLASE B) (ACETYL-COA ACYLTRANSFERASE B) (PEROXISOMAL 3-OXOACYL- COA THIOLASE B) (db=HMMPanther db_id=PTHR18919:SF15 from=65 to=152 evalue=4.2e-07)
AMDSBA1_17_81
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75899..77071
DNA (1173bp) protein (391aa)
mii; 3-methylitaconate isomerase Mii (EC:5.3.3.6)
mii; 3-methylitaconate isomerase Mii (EC:5.3.3.6)
3-methylitaconate isomerase n=1 Tax=Eubacterium barkeri RepID=MII_EUBBA (db=UNIREF evalue=9.5e-76 bit_score=289.7 identity=41.0 coverage=96.16368286445012)
seg (db=Seg db_id=seg from=350 to=367)
AMDSBA1_17_82
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

77184..78473
DNA (1290bp) protein (430aa)
putative glucarate transporter
Probable sulfoacetate transporter SauU n=3 Tax=Cupriavidus RepID=SAUU_CUPNH (db=UNIREF evalue=1.3e-30 bit_score=139.8 identity=26.0 coverage=94.88372093023256)
transmembrane_regions (db=TMHMM db_id=tmhmm from=146 to=168)
transmembrane_regions (db=TMHMM db_id=tmhmm from=173 to=195)
AMDSBA1_17_83
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

78555..79565
DNA (1011bp) protein (337aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Ferredoxin--NADP reductase n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=FENR_SACEN (db=UNIREF evalue=1.5e-66 bit_score=258.8 identity=45.4 coverage=95.54896142433235)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=147 to=167)
AMDSBA1_17_84
Sulfolobus islandicus, Sulfolobus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

79601..81196
DNA (1596bp) protein (532aa)
benzoate-CoA ligase family rbh
benzoate-CoA ligase family rbh
Benzoate-CoA ligase family n=4 Tax=Geobacillus RepID=C9RTK5_GEOSY (db=UNIREF evalue=4.4e-140 bit_score=503.8 identity=48.3 coverage=96.2406015037594)
AMDSBA1_17_85
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(81564..82361)
DNA (798bp) protein (266aa)
hypothetical protein
Metallo-beta-lactamase superfamily domain-containing protein n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5HYY4_9ACTO (db=UNIREF evalue=1.4e-38 bit_score=165.6 identity=38.6 coverage=95.11278195488721)
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=1 to=233 evalue=5.5e-22)
no description (db=Gene3D db_id=G3DSA:3.60.15.10 from=7 to=211 evalue=4.2e-14)
Displaying items 61-85 of 85 in total

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