ggKbase home page

AMDSBA1_43_5

Organism: S._benefaciens_IM1

near complete RP 52 / 55 MC: 14 BSCG 51 / 51 ASCG 0 / 38
Location: comp(4895..5317)

Top 3 Functional Annotations

Value Algorithm Source
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=7 to=121 evalue=2.8e-19) iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 2.80e-19
no description (db=HMMSmart db_id=SM00345 from=20 to=79 evalue=2.1e-15 interpro_id=IPR000524 interpro_description=Transcription regulator HTH, GntR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: HMMSmart
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 2.10e-15
(db=HMMPfam db_id=PF00392 from=16 to=79 evalue=1.4e-13 interpro_id=IPR000524 interpro_description=Transcription regulator HTH, GntR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: HMMPfam
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 1.40e-13

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thermosinus carboxydivorans → Thermosinus → Selenomonadales → Negativicutes → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 423
ATGACCACTCTGAAAATTACTGTTGAGATGAAATCCGGTGTGCCTCTTTACGTACAGATTCGCGACCAAATCAAGGCCGCCATTGAATCGGGCCGGATCCCGGCCCATTACCGCCTTCATACCATACGGGAACTGGCCGGCATACTCAGAATCAACCCCAACACGGTCGCCCGTGCTTACCGGGAACTGGAACACGAGGGATATCTTGAAACCCTTTCGGGCCGGGGAACCTTCGTCGTGCACAAAGAGCCGGCATCGACCGAGTTTGAACCGGATTATTGGATCGTTGCCGAACTCGAGGACTGCTTTAAACGAATCGAATCCGAGTGGCATGTTCCGCCACAGCGTCTGCTCCATATGGCCACGCAAGCGATAGAAAGACTGTCCGTTGCCAATAAGACAAGAGAAAAAACCCGGCAATGA
PROTEIN sequence
Length: 141
MTTLKITVEMKSGVPLYVQIRDQIKAAIESGRIPAHYRLHTIRELAGILRINPNTVARAYRELEHEGYLETLSGRGTFVVHKEPASTEFEPDYWIVAELEDCFKRIESEWHVPPQRLLHMATQAIERLSVANKTREKTRQ*