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AMDSBA3_16_18

Organism: S._acidophilus_IM3

near complete RP 45 / 55 MC: 1 BSCG 50 / 51 ASCG 0 / 38
Location: comp(21132..22175)

Top 3 Functional Annotations

Value Algorithm Source
LacI family transcriptional repressor similarity KEGG
DB: KEGG
  • Identity: 39.6
  • Coverage: 328.0
  • Bit_score: 226
  • Evalue 1.40e-56
Transcriptional regulator, LacI family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D2G2_PAESJ (db=UNIREF evalue=2.9e-28 bit_score=131.7 identity=28.5 coverage=86.7816091954023) similarity UNIREF
DB: UNIREF
  • Identity: 28.5
  • Coverage: 86.78
  • Bit_score: 131
  • Evalue 2.90e-28
HTH_LACI_1 (db=PatternScan db_id=PS00356 from=11 to=29 evalue=0.0 interpro_id=IPR000843 interpro_description=Transcription regulator HTH, LacI GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: PatternScan
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 0.0

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Taxonomy

Symbiobacterium thermophilum → Symbiobacterium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 1044
GTGAGCGGACACGCACGTCAGCATCCGACAATTAAAGACGTGGCCGAACGCGCCCAAGTCTCTCCCGCGACCGTGTCCAGCGTGTTGCGGGCGAATAAGAACGTGAGCGATATTTCCCGCCAAAAGGTGCTGGAGGCCATCGAAGCATTGGGATATCGGCCTAATCGGCTGGCGCAAGCCTTGCGCACACAGCGCAGTCGGACGGTGGGATTGATTATCCCGGATATTACCAACCCTTTTTACGCGGACATTGCGCAAGGCGCAACCGATCAGGCGCGCGAGTCCGGTTATGGTCTATTTTTAATGACAGCCTGCGAGAGTGAGACCGCCTTGCGGCAAGCCGCGGAAGAACTAGTACAACGGCAAGTCGATGGCCTGCTTTTGACAAGTGTCGGGTTGGACTACGCCATCACCCCGTGGCAGTTGGACAAGGTGCCATACGTCTTAGTTAATCGCTATGCCAAGACGGCTGTGGCCGATTACGTAGGCATTGACAATCGCAGCGGGGCCCAAGAAGTGGTGCGCTTTTTACATGGACTGGGACATCGTCGCATTGCCTTTATCGGCGGCCTTCCGCACTCCAGTGCCAGTCGCGACCGACTGGAAGGGTTCTACGCGGCCATGCAGGAACTGGATTTGACGCTGTCACCGTTGCATATCGGGTTTGCCGATTTGCAGTACGACAAAGCGATGAAGCTGGTGCAAAGCATGCTGCAAACCGAACCGCGCCCGTCCGCCGTGTTCGCGGCCGACGACATGATGGCGCTCGGAGCTTGGGAAGGGGCCCAGTCGGTGGGTGTGCGGGTTCCCCAGGATTTATCGATTGTGGGGTTTGATGGGATCTGGAGTACTGCCTGGGCCGGGATCCAACTGAGTACGGTGGTACAGCCGCGCTATGAGTTGGGTCGTCTAGCTGTGTCGTTGTTGCACGAACGGATCCAAGGGTTGACGAGCCCGGCTCGCGTCCGGTTGCTGCCGTATCAGTTCATGGCCCGTCGCACGACCGCCGCTGCGCCCATCGATTCTGTTCGTTCTATTAATTAA
PROTEIN sequence
Length: 348
VSGHARQHPTIKDVAERAQVSPATVSSVLRANKNVSDISRQKVLEAIEALGYRPNRLAQALRTQRSRTVGLIIPDITNPFYADIAQGATDQARESGYGLFLMTACESETALRQAAEELVQRQVDGLLLTSVGLDYAITPWQLDKVPYVLVNRYAKTAVADYVGIDNRSGAQEVVRFLHGLGHRRIAFIGGLPHSSASRDRLEGFYAAMQELDLTLSPLHIGFADLQYDKAMKLVQSMLQTEPRPSAVFAADDMMALGAWEGAQSVGVRVPQDLSIVGFDGIWSTAWAGIQLSTVVQPRYELGRLAVSLLHERIQGLTSPARVRLLPYQFMARRTTAAAPIDSVRSIN*