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AMDSBA3_88_5

Organism: S._acidophilus_IM3

near complete RP 45 / 55 MC: 1 BSCG 50 / 51 ASCG 0 / 38
Location: 4277..4915

Top 3 Functional Annotations

Value Algorithm Source
seg (db=Seg db_id=seg from=76 to=94) iprscan interpro
DB: Seg
  • Identity: null
  • Coverage: null
  • Bit_score: null
(db=HMMPfam db_id=PF08281 from=6 to=53 evalue=2.0e-08 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 2.00e-08
C-terminal effector domain of the bipartite response regulators (db=superfamily db_id=SSF46894 from=5 to=54 evalue=9.9e-07 interpro_id=IPR016032 interpro_description=Signal transduction response regulator, C-terminal effector GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Cellular Component: intracellular (GO:0005622), Biological Process: reg iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 9.90e-07

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Taxonomy

Sequences

DNA sequence
Length: 639
ATGACACCCCATAAGGAATTAAAACCTCATCTCACTCCTAAAGAACGCCATACATTGGAGTTGGCAATCCAGGGAATGTCGGTGGAGAAAATCGCGTCCAATCTGCAGCAGTCACCCAAGGTCGTGGAGCGATACATTCACCGTGGCTTGCAAAAGCTCGAATCGTGGTCGTACGACGCAGCCCCTGGCCCTAGTTTTCGCTCGTCGCAGGAGCGGCAGTGGGGGATATTGCCACCCCGGGCGGCCGAGCGGCGCATTGCCCGTATTTTGCGGGAGGAGCCACATGATTGGGGCTGCGTGGTCGTGCTGGGAATATCCGAGCCGCGACATCGAGTGAATACACAAGCTGTCGAGAATGTGACTCGCCACATCCACCGCAGTACCCGCGTGACAGACATCGTGACCAAATGGAGCATGGCGGAGTGGGTCATTTTCTTGGCGCACGTGTCAGAAATGCAAAGCGAAATGATCGTTCATCGCCTGGAACAATCTGACGCCTTGGGCTTCCCGGTATTTGTTGCGGTCCAGCATGCGCCAGCCTCTGCGTCATTTCACGAGGTGGCGATGAAATGCCATCAGGATTTGCTGAGACGTTACGTGAACTACGACATGGCTAGCATGATGCAGAGTGCTCCCTAG
PROTEIN sequence
Length: 213
MTPHKELKPHLTPKERHTLELAIQGMSVEKIASNLQQSPKVVERYIHRGLQKLESWSYDAAPGPSFRSSQERQWGILPPRAAERRIARILREEPHDWGCVVVLGISEPRHRVNTQAVENVTRHIHRSTRVTDIVTKWSMAEWVIFLAHVSEMQSEMIVHRLEQSDALGFPVFVAVQHAPASASFHEVAMKCHQDLLRRYVNYDMASMMQSAP*