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AMDSBA4_14

Alias: AMDSBA4_C13

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Displaying items 31-60 of 66 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_14_31
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20933..21271)
DNA (339bp) protein (113aa)
ribonuclease P protein component
seg (db=Seg db_id=seg from=56 to=69)
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=5 to=109 evalue=1.4e-24 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
(db=HMMPfam db_id=PF00825 from=1 to=107 evalue=1.7e-23 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
AMDSBA4_14_32
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21720..23078
DNA (1359bp) protein (453aa)
dnaA; chromosomal replication initiator protein DnaA
dnaA; chromosomal replication initiator protein DnaA
Chromosomal replication initiator protein DnaA n=2 Tax=Clostridium kluyveri RepID=DNAA_CLOK1 (db=UNIREF evalue=6.8e-142 bit_score=509.6 identity=55.1 coverage=97.13024282560706)
AMDSBA4_14_33
unknown

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23110..23307
DNA (198bp) protein (66aa)
23110..23307 + ( gc_cont=0.404)
AMDSBA4_14_34
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23369..24481
DNA (1113bp) protein (371aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Bulleidia extructa W1219 RepID=D2MMX4_9FIRM (db=UNIREF evalue=9.8e-30 bit_score=136.7 identity=23.4 coverage=98.92183288409704)
dnan: DNA polymerase III, beta subunit (db=HMMTigr db_id=TIGR00663 from=1 to=368 evalue=1.6e-58 interpro_id=IPR001001 interpro_description=DNA polymerase III, beta chain GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408), Cellular Component: DNA polymerase III complex (GO:0009360))
AMDSBA4_14_35
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24542..25552
DNA (1011bp) protein (337aa)
DNA replication and repair protein RecF
DNA replication and repair protein RecF n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=RECF_CHLT3 (db=UNIREF evalue=6.8e-30 bit_score=137.1 identity=29.3 coverage=92.28486646884274)
RECF_2 (db=PatternScan db_id=PS00618 from=276 to=294 evalue=0.0 interpro_id=IPR018078 interpro_description=DNA-binding, RecF, conserved site GO=Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
recf: DNA replication and repair protein Rec (db=HMMTigr db_id=TIGR00611 from=1 to=330 evalue=6.6e-48 interpro_id=IPR001238 interpro_description=DNA-binding, RecF GO=Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
AMDSBA4_14_36
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25553..26089
DNA (537bp) protein (179aa)
(db=HMMPfam db_id=PF05258 from=6 to=93 evalue=9.8e-19 interpro_id=IPR007922 interpro_description=Protein of unknown function DUF721/UPF0232)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03582.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I309_SULAT
AMDSBA4_14_37
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26129..26380
DNA (252bp) protein (84aa)
26129..26380 + ( gc_cont=0.496)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ38233.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I310_SULAT
AMDSBA4_14_38
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


26457..28370
DNA (1914bp) protein (638aa)
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=64 Tax=Neisseria RepID=GYRB_NEIGO (db=UNIREF evalue=1.1e-158 bit_score=565.8 identity=50.5 coverage=89.34169278996865)
seg (db=Seg db_id=seg from=104 to=126)
AMDSBA4_14_39
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


28397..30853
DNA (2457bp) protein (819aa)
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUP4_9DELT (db=UNIREF evalue=7.2e-243 bit_score=845.9 identity=51.0 coverage=99.51159951159951)
seg (db=Seg db_id=seg from=728 to=748)
AMDSBA4_14_40
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30929..31819
DNA (891bp) protein (297aa)
Pyridoxal biosynthesis protein PDX1.1 n=2 Tax=Arabidopsis RepID=PDX11_ARATH (db=UNIREF evalue=1.0e-98 bit_score=365.5 identity=67.0 coverage=93.60269360269359)
seg (db=Seg db_id=seg from=90 to=100)
Pyridoxine biosynthesis protein Pdx1 (db=HMMPIR db_id=PIRSF029271 from=1 to=296 evalue=7.4e-208 interpro_id=IPR001852 interpro_description=Vitamin B6 biosynthesis protein GO=Biological Process: pyridoxal phosphate biosynthetic process (GO:0042823))
AMDSBA4_14_41
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31825..32412
DNA (588bp) protein (196aa)
pyridoxal phosphate synthase yaaE subunit
Glutamine amidotransferase subunit PdxT n=2 Tax=Actinomyces odontolyticus RepID=D4U156_9ACTO (db=UNIREF evalue=1.7e-44 bit_score=184.9 identity=49.5 coverage=96.42857142857143)
PDXT_SNO_1 (db=PatternScan db_id=PS01236 from=40 to=50 evalue=0.0 interpro_id=IPR021196 interpro_description=PdxT/SNO family, conserved site)
Glutamine amidotransferase, SNO type (db=HMMPIR db_id=PIRSF005639 from=1 to=192 evalue=1.1e-93 interpro_id=IPR002161 interpro_description=Glutamine amidotransferase subunit PdxT)
AMDSBA4_14_42
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32692..33729
DNA (1038bp) protein (346aa)
methylthioribose-1-phosphate isomerase (EC:5.3.1.23)
Methylthioribose-1-phosphate isomerase n=1 Tax=Aedes aegypti RepID=MTNA_AEDAE (db=UNIREF evalue=1.1e-70 bit_score=272.7 identity=44.9 coverage=94.79768786127167)
salvage_mtnA: S-methyl-5-thioribose-1-ph (db=HMMTigr db_id=TIGR00512 from=4 to=329 evalue=5.2e-176 interpro_id=IPR005251 interpro_description=Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase GO=Biological Process: cellular biosynthetic process (GO:0044249))
TRANSLATION INITIATION FACTOR EIF-2B (db=HMMPanther db_id=PTHR10233 from=24 to=345 evalue=3.3e-144 interpro_id=IPR000649 interpro_description=Initiation factor 2B-related GO=Biological Process: cellular metabolic process (GO:0044237))
AMDSBA4_14_43
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33722..34987
DNA (1266bp) protein (422aa)
seryl-tRNA synthetase (EC:6.1.1.11)
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase 1 n=58 Tax=Enterococcus RepID=SYS1_ENTFA (db=UNIREF evalue=4.6e-108 bit_score=397.1 identity=49.4 coverage=99.52606635071089)
AMDSBA4_14_44
unknown

Not on your lists

35004..35507
DNA (504bp) protein (168aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=134 to=156)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA4_14_45
Pseudothermotoga thermarum, Pseudothermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

35706..37316
DNA (1611bp) protein (537aa)
N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
N-acyl-D-amino-acid deacylase (Fragment) n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTR7_9FIRM (db=UNIREF evalue=1.0e-96 bit_score=359.8 identity=39.1 coverage=95.34450651769087)
AMDSBA4_14_46

Not on your lists

37910..38116
DNA (207bp) protein (69aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DGJ5_9RHIZ (db=UNIREF evalue=4.6e-10 bit_score=68.9 identity=63.5 coverage=72.46376811594203)
(db=HMMPfam db_id=PF11455 from=5 to=67 evalue=2.1e-28 interpro_id=IPR021558 interpro_description=Protein of unknown function DUF3018)
Uncharacterized protein {ECO:0000313|EMBL:EQD68909.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
AMDSBA4_14_47
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38101..38457
DNA (357bp) protein (119aa)
transcriptional modulator of MazE/toxin MazF
PemK-like protein n=5 Tax=Xanthomonas RepID=D4T0G7_9XANT (db=UNIREF evalue=4.1e-22 bit_score=109.8 identity=50.0 coverage=86.5546218487395)
seg (db=Seg db_id=seg from=104 to=115)
Cell growth inhibitor/plasmid maintenance toxic component (db=superfamily db_id=SSF50118 from=3 to=113 evalue=3.1e-22 interpro_id=IPR011067 interpro_description=Plasmid maintenance toxin/Cell growth inhibitor)
AMDSBA4_14_48
Metallosphaera sedula, Metallosphaera, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

39423..40847
DNA (1425bp) protein (475aa)
major facilitator transporter
Major facilitator superfamily MFS_1 n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YG13_METS5 (db=UNIREF evalue=2.6e-104 bit_score=384.8 identity=43.3 coverage=92.63157894736842)
transmembrane_regions (db=TMHMM db_id=tmhmm from=172 to=194)
transmembrane_regions (db=TMHMM db_id=tmhmm from=199 to=221)
AMDSBA4_14_49
unknown

Not on your lists

40917..41066
DNA (150bp) protein (50aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=23 to=34)
AMDSBA4_14_50
unknown

Not on your lists

comp(41297..41482)
DNA (186bp) protein (62aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
AMDSBA4_14_51
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(41584..42513)
DNA (930bp) protein (310aa)
oxyR; LysR family transcriptional regulator
LysR family transcriptional regulator n=1 Tax=Pseudomonas sp. M47T1 RepID=I4MXX5_9PSED (db=UNIREF evalue=1.6e-17 bit_score=95.9 identity=28.7 coverage=82.25806451612904)
seg (db=Seg db_id=seg from=168 to=180)
(db=HMMPfam db_id=PF03466 from=90 to=291 evalue=5.4e-47 interpro_id=IPR005119 interpro_description=LysR, substrate-binding)
AMDSBA4_14_52
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42649..43485)
DNA (837bp) protein (279aa)
NAD-dependent formate dehydrogenase iron-sulfur protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TT93_9FIRM (db=UNIREF evalue=1.2e-109 bit_score=401.7 identity=67.8 coverage=97.1326164874552)
seg (db=Seg db_id=seg from=3 to=16)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=187 to=198 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
MOLYBDOPTERIN_PROK_1 (db=PatternScan db_id=PS00551 from=226 to=244 evalue=0.0 interpro_id=IPR006655 interpro_description=Molybdopterin oxidoreductase, prokaryotic, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: oxidoreductase activity, acting on other nitrogenous compounds as donors (GO:0016661), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_14_53
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43510..44724)
DNA (1215bp) protein (405aa)
respiratory-chain NADH dehydrogenase domain 51 kDa subunit
NADH oxidoreductase (Quinone), F subunit n=3 Tax=Nitrosococcus RepID=B6C0U4_9GAMM (db=UNIREF evalue=2.8e-70 bit_score=271.6 identity=37.8 coverage=92.5925925925926)
NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 (NDUFV1) (db=HMMPanther db_id=PTHR11780 from=1 to=397 evalue=1.3e-129)
COMPLEX1_51K_2 (db=PatternScan db_id=PS00645 from=338 to=349 evalue=0.0 interpro_id=IPR001949 interpro_description=NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO=Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137), Molecular Function: FMN binding (GO:0010181), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_14_54
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44717..45166)
DNA (450bp) protein (150aa)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=4 to=145 evalue=1.8e-27 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
(db=HMMPfam db_id=PF01257 from=14 to=144 evalue=1.9e-25 interpro_id=IPR002023 interpro_description=NADH:ubiquinone oxidoreductase, 24kDa subunit GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT (db=HMMPanther db_id=PTHR10371 from=6 to=144 evalue=4.8e-13 interpro_id=IPR002023 interpro_description=NADH:ubiquinone oxidoreductase, 24kDa subunit GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
NADH-quinone oxidoreductase subunit F 2
AMDSBA4_14_56
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(45202..47106)
DNA (1905bp) protein (635aa)
NAD-dependent formate dehydrogenase catalytic subunit (EC:1.7.99.4)
NAD-dependent formate dehydrogenase catalytic subunit n=1 Tax=Sulfobacillus acidophilus DSM 10332 RepID=G8TT95_9FIRM (db=UNIREF evalue=2.5e-24 bit_score=116.7 identity=74.0 coverage=85.39325842696628)
Formate dehydrogenase/DMSO reductase, domains 1-3 (db=superfamily db_id=SSF53706 from=10 to=87 evalue=5.1e-18)
no description (db=Gene3D db_id=G3DSA:3.40.50.740 from=13 to=88 evalue=3.8e-16)
AMDSBA4_14_57
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47147..47590)
DNA (444bp) protein (148aa)
putative PAS/PAC sensor protein
Putative PAS/PAC sensor protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TU09_9PROT (db=UNIREF evalue=1.9e-32 bit_score=144.4 identity=48.2 coverage=93.24324324324324)
PYP-like sensor domain (PAS domain) (db=superfamily db_id=SSF55785 from=18 to=136 evalue=1.8e-25)
TWO COMPONENT HISTIDINE KINASE (SPORULATION KINASE) (db=HMMPanther db_id=PTHR23283:SF24 from=1 to=136 evalue=6.6e-12)
AMDSBA4_14_58
Providencia stuartii, Providencia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47626..49293)
DNA (1668bp) protein (556aa)
putative oxalyl-CoA decarboxylase (EC:4.1.1.8)
putative oxalyl-CoA decarboxylase (EC:4.1.1.8)
Oxalyl-CoA decarboxylase n=1 Tax=Ahrensia sp. R2A130 RepID=E0MTY7_9RHOB (db=UNIREF evalue=5.6e-207 bit_score=726.1 identity=63.3 coverage=99.28057553956835)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=363 to=553 evalue=7.7e-41)
AMDSBA4_14_59
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(49438..50688)
DNA (1251bp) protein (417aa)
formyl-coenzyme A transferase (EC:2.8.3.16)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Azospirillum amazonense Y2 RepID=G1XVP3_9PROT (db=UNIREF evalue=2.8e-09 bit_score=68.9 identity=29.5 coverage=34.2925659472422)
CoA-transferase family III (CaiB/BaiF) (db=superfamily db_id=SSF89796 from=1 to=416 evalue=4.2e-132 interpro_id=IPR023606 interpro_description=CoA-transferase family III domain)
seg (db=Seg db_id=seg from=242 to=252)
AMDSBA4_14_60
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

51134..52087
DNA (954bp) protein (318aa)
oxyR; LysR family transcriptional regulator
LysR family transcriptional regulator n=3 Tax=Enterobacter RepID=D5CIL1_ENTCC (db=UNIREF evalue=1.1e-13 bit_score=83.2 identity=23.9 coverage=88.9937106918239)
seg (db=Seg db_id=seg from=94 to=105)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=81 to=299 evalue=1.1e-35)
AMDSBA4_14_61
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

52268..53185
DNA (918bp) protein (306aa)
aryl-alcohol dehydrogenase
aryl-alcohol dehydrogenase
Oxidoreductase YdhF n=1 Tax=Ruegeria sp. R11 RepID=B7QTU5_9RHOB (db=UNIREF evalue=1.8e-37 bit_score=162.2 identity=32.3 coverage=93.79084967320262)
ALDO/KETO REDUCTASE (db=HMMPanther db_id=PTHR11732 from=1 to=271 evalue=9.3e-95 interpro_id=IPR001395 interpro_description=Aldo/keto reductase)
Displaying items 31-60 of 66 in total

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