ggKbase | organisms

Advanced Search

Leptospirillum_ferrodiazotrophum_Group_III_goltsman2007

amd_refseq_Leptospirillum_ferrodiazotrophum_58_1

In projects: amd_refseq | AMD_2019 | alphabet_plasma

Consensus taxonomy: Leptospirillum ferrodiazotrophum → Leptospirillum → Nitrospirales → Nitrospira → Nitrospirae → Bacteria

Metagenomic Context

Properties

Avg. coverage: 1.00 Longest contig: 244.03 Kbp Bin length: 2.80 Mbp GC content: 58.42 %

Contigs count: 42 Features count: 2756 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 ASCG 13 / 38

Description

Leptospirillum ferrodiazotrophum genomic scaffold UBAL3_8015, whole genome shotgun sequence

Displaying 42 items

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
GG693851	71	66712 bp	57.92	1.00	0.00
GG693852	127	123087 bp	59.35	1.00	0.00
GG693853	81	66685 bp	55.89	1.00	0.00
GG693854	20	15389 bp	49.41	1.00	0.00
GG693855	26	27777 bp	56.17	1.00	0.00
GG693856	41	45998 bp	57.69	1.00	0.00
GG693857	82	78076 bp	57.76	1.00	0.00
GG693858	3	7163 bp	60.99	1.00	0.00
GG693859	89	99876 bp	58.96	1.00	0.00
GG693860	11	9172 bp	54.49	1.00	0.00
GG693861	5	9775 bp	67.14	1.00	0.00
GG693862	128	128356 bp	56.59	1.00	0.00
GG693863	38	38165 bp	54.42	1.00	0.00
GG693865	75	71103 bp	57.02	1.00	0.00
GG693868	86	98351 bp	62.26	1.00	0.00
GG693869	77	68852 bp	54.43	1.00	0.00
GG693870	111	102929 bp	58.23	1.00	0.00
GG693871	57	50602 bp	58.08	1.00	0.00
GG693872	18	16221 bp	57.88	1.00	0.00
GG693873	243	244031 bp	57.34	1.00	0.00
GG693874	5	3150 bp	55.78	1.00	0.00
GG693875	122	128322 bp	58.63	1.00	0.00
GG693876	19	17404 bp	55.01	1.00	0.00
GG693877	96	91393 bp	58.27	1.00	0.00
GG693878	194	225263 bp	61.46	1.00	0.00
GG693879	65	80151 bp	61.28	1.00	0.00
GG693880	112	126044 bp	58.57	1.00	0.00
GG693881	9	7589 bp	52.44	1.00	0.00
GG693882	66	61409 bp	59.71	1.00	0.00
GG693883	27	25788 bp	53.95	1.00	0.00
GG693884	164	181677 bp	61.90	1.00	0.00
GG693885	55	55115 bp	57.40	1.00	0.00
GG693886	20	17755 bp	48.81	1.00	0.00
GG693887	150	153921 bp	59.83	1.00	0.00
GG693888	61	57721 bp	59.16	1.00	0.00
GG693889	46	43226 bp	57.76	1.00	0.00
GG693890	21	20289 bp	62.98	1.00	0.00
GG693891	30	32853 bp	57.12	1.00	0.00
GG693892	16	16085 bp	42.52	1.00	0.00
GG693864	22	17045 bp	58.03	1.00	0.00
GG693866	12	22588 bp	60.05	1.00	0.00
GG693867	55	50552 bp	51.98	1.00	0.00

Displaying 42 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

ggKBase is a service designed to assist in analyzing and integrating *omic data (e.g. metagenomics, proteomics, etc). The source code for ggKBase will be made available as an open source project.
You are encouraged to contact the development staff with issues related to usage of ggKBase. The ggKBase development staff as well as the members of the Banfield lab at the University of California, Berkeley, are not available to support outside research/computation requests.
We aim to make ggKBase the best resource possible and to make it accurate and available at all times; however, we cannot guarantee the correctness of any results, validity or integrity of the data, or the availability of the service: We cannot be held responsible for decisions made, losses suffered, or damages that resulted from using data from ggKBase.
We respect our user’s privacy and will not share any user registration details with anyone other than the ggKBase developers.
ggKBase is a social web site – it has mechanisms to share results and comments with other users of the system. As a registered user of ggKBase, you agree to respect the rights of other users and conduct yourself in a professional manner with courtesy and collegiality towards your fellow users. We reserve the right to delete users found not upholding these standards.
We reserve the right to reject inappropriate data submissions. As a User, you agree not to submit data that is not your own and you agree that any data you do submit is being submitted specifically for the purposes of analyzing using ggKBase.
ggKBase and its underlying servers and systems are properly administrated and backed up. However, ggKBase is not responsible for data loss or work loss as a result of system or hardware failures or criminal activity.
We reserve the right to perform additional data analysis to improve ggKBase, and we will not release user-contributed data without consent of the user.
Users of ggKBase are expected to properly cite any published work.
We reserve the right at any time to modify the Terms of Service for ggKBase. Modifications to these Terms will be effective immediately and we will make a reasonable effort to contact users via email of any changes. If you continue using ggKBase after an amendment to the Terms of Service, we assume you have read and accepted the changes.