ggKbase home page
Advanced Search
Search Help

anamox1_Betaproteobacteria_69_7_curated

anamox1_Betaproteobacteria_66_1
In projects: anamox1  |  LAC_year1  |  LAC_reactor_startup  |  anammox_full

Consensus taxonomy: Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: anamox1_Betaproteobacteria_69_7 Manually curated genome
Original version: anamox1_Betaproteobacteria_69_7

Properties

Avg. coverage: 1.00 Longest contig: 12.35 Kbp Bin length: 2.11 Mbp GC content: 66.39 %
Contigs count: 531 Features count: 2636 rRNAs count: 0 tRNAs count: 24

Genome completeness

near complete RP 42 / 55 BSCG 45 / 51 MC: 1 ASCG 11 / 38 MC: 1
Displaying items 151-200 of 531 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
anamox1_curated_scaffold_17403
Species: Verminephrobacter eiseniae (66.67%)
3 2999 bp 67.79 1.00 91.63
anamox1_curated_scaffold_10068
Species: RLO_Betaproteobacteria_65_14 (75%)
4 4034 bp 69.86 1.00 91.62
anamox1_curated_scaffold_26006
Class: Betaproteobacteria (60%)
5 5596 bp 67.80 1.00 91.57
anamox1_curated_scaffold_2625
Class: Betaproteobacteria (63.64%)
11 11689 bp 65.60 1.00 91.52
anamox1_curated_scaffold_18631
Class: Betaproteobacteria (71.43%)
7 5174 bp 67.07 1.00 91.38
anamox1_curated_scaffold_7753
Class: Betaproteobacteria (57.14%)
7 5086 bp 71.79 1.00 91.31
anamox1_curated_scaffold_13390
Phylum: Proteobacteria (75%)
4 3419 bp 71.25 1.00 91.25
anamox1_curated_scaffold_10147
Order: Rhodocyclales (66.67%)
3 4325 bp 68.69 1.00 91.01
anamox1_curated_scaffold_15568
Class: Betaproteobacteria (50%)
4 2934 bp 71.30 1.00 91.00
anamox1_curated_scaffold_17997
Species: CG_Rhodocyc_01 (50%)
2 2627 bp 67.34 1.00 90.90
anamox1_curated_scaffold_9687
Class: Betaproteobacteria (100%)
9 7801 bp 67.80 1.00 90.83
anamox1_curated_scaffold_18664
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated (50%)
2 2160 bp 68.56 1.00 90.83
anamox1_curated_scaffold_18858
Class: Betaproteobacteria (100%)
3 2498 bp 69.78 1.00 90.79
anamox1_curated_scaffold_17544
Class: Betaproteobacteria (66.67%)
3 2857 bp 68.29 1.00 90.72
anamox1_curated_scaffold_19174
Class: Betaproteobacteria (83.33%)
6 4402 bp 67.45 1.00 90.64
anamox1_curated_scaffold_15121
Domain: Bacteria (66.67%)
3 4116 bp 65.67 1.00 90.52
anamox1_curated_scaffold_12476
Phylum: Proteobacteria (75%)
8 3377 bp 66.24 1.00 90.52
anamox1_curated_scaffold_12578
Class: Betaproteobacteria (66.67%)
3 3676 bp 65.59 1.00 90.51
anamox1_curated_scaffold_3405
Class: Betaproteobacteria (55.56%)
9 9872 bp 64.91 1.00 90.50
anamox1_curated_scaffold_10372
Class: Betaproteobacteria (75%)
8 4039 bp 69.18 1.00 90.39
anamox1_curated_scaffold_15927
Class: Betaproteobacteria (100%)
3 2868 bp 72.14 1.00 90.38
anamox1_curated_scaffold_7226
Class: Betaproteobacteria (50%)
6 5278 bp 66.75 1.00 90.38
anamox1_curated_scaffold_12328
Order: Burkholderiales (60%)
5 3414 bp 67.40 1.00 90.33
anamox1_curated_scaffold_10762
Class: Betaproteobacteria (50%)
4 3939 bp 69.76 1.00 90.33
anamox1_curated_scaffold_14587
Class: Betaproteobacteria (50%)
4 3102 bp 68.02 1.00 90.23
anamox1_curated_scaffold_15003
Phylum: Proteobacteria (80%)
5 2824 bp 71.10 1.00 90.19
anamox1_curated_scaffold_25891
Class: Betaproteobacteria (60%)
5 2825 bp 70.41 1.00 90.16
anamox1_curated_scaffold_18101
Class: Betaproteobacteria (50%)
6 2617 bp 71.53 1.00 90.14
anamox1_curated_scaffold_17373
Phylum: Proteobacteria (80%)
5 2634 bp 64.54 1.00 89.98
anamox1_curated_scaffold_5447
Class: Betaproteobacteria (66.67%)
9 6792 bp 69.42 1.00 89.97
anamox1_curated_scaffold_13532
Species: Bordetella holmesii (50%)
4 3557 bp 67.78 1.00 89.91
anamox1_curated_scaffold_12517
Class: Betaproteobacteria (100%)
6 3691 bp 68.03 1.00 89.81
anamox1_curated_scaffold_7026
Class: Betaproteobacteria (83.33%)
6 6496 bp 67.40 1.00 89.78
anamox1_curated_scaffold_16000
Class: Betaproteobacteria (50%)
4 3095 bp 69.01 1.00 89.76
anamox1_curated_scaffold_18115
Class: Betaproteobacteria (100%)
4 2728 bp 68.70 1.00 89.74
anamox1_curated_scaffold_8628
Order: Burkholderiales (50%)
4 4425 bp 67.53 1.00 89.63
anamox1_curated_scaffold_17714
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated (50%)
4 2641 bp 72.32 1.00 89.63
anamox1_curated_scaffold_6687
Class: Betaproteobacteria (60%)
5 5741 bp 67.95 1.00 89.62
anamox1_curated_scaffold_4465
Class: Betaproteobacteria (90.91%)
11 8085 bp 67.87 1.00 89.57
anamox1_curated_scaffold_15176
Class: Betaproteobacteria (80%)
5 3010 bp 70.27 1.00 89.50
anamox1_curated_scaffold_5707
Order: Burkholderiales (66.67%)
6 6403 bp 66.94 1.00 89.49
anamox1_curated_scaffold_10211
Class: Betaproteobacteria (60%)
5 4184 bp 66.25 1.00 89.48
anamox1_curated_scaffold_17883
Class: Betaproteobacteria (100%)
4 2418 bp 68.73 1.00 89.45
anamox1_curated_scaffold_34307
Phylum: Proteobacteria (60%)
5 2560 bp 70.70 1.00 89.30
anamox1_curated_scaffold_12296
Genus: Acidovorax (50%)
4 3531 bp 66.38 1.00 89.12
anamox1_curated_scaffold_11955
Class: Betaproteobacteria (100%)
4 3510 bp 66.55 1.00 89.06
anamox1_curated_scaffold_7581
Class: Betaproteobacteria (75%)
4 5528 bp 65.30 1.00 89.06
anamox1_curated_scaffold_13117
Species: Thiomonas intermedia (50%)
2 3450 bp 66.55 1.00 89.04
anamox1_curated_scaffold_6597
Class: Betaproteobacteria (80%)
5 5911 bp 67.76 1.00 89.02
anamox1_curated_scaffold_17111
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated (50%)
4 2738 bp 67.09 1.00 88.97
Displaying items 151-200 of 531 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.