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13_1_20CM_3_Alphaproteobacteria_64_12

In projects: 13_1_20CM_3  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: 13_1_20cm_3_UNK

Properties

Avg. coverage: 11.60 Longest contig: 27.15 Kbp Bin length: 1.87 Mbp GC content: 64.11 %
Contigs count: 162 Features count: 1975 rRNAs count: 0 tRNAs count: 10

Genome completeness

partial RP 29 / 55 MC: 1 BSCG 28 / 51 ASCG 5 / 38

Description

proteobacterium 7cls probably contaminant based on node characteristic in RPS3 tree

Displaying items 1-50 of 162 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
13_1_20cm_3_scaffold_1963
Order: Rhodospirillales (65.63%)
32 17230 bp 65.55 13.61 95.31
13_1_20cm_3_scaffold_7867
Class: Alphaproteobacteria (59.38%)
32 25465 bp 64.26 11.53 82.44
13_1_20cm_3_scaffold_3756
Genus: Bradyrhizobium (73.33%)
30 27149 bp 62.90 12.04 90.00
13_1_20cm_3_scaffold_11130
Order: Rhodospirillales (51.85%)
27 18905 bp 66.81 13.22 86.71
13_1_20cm_3_scaffold_1867
Order: Rhodospirillales (54.17%)
24 19885 bp 65.60 12.76 88.53
13_1_20cm_3_scaffold_1089
Class: Alphaproteobacteria (56.52%)
23 20426 bp 65.33 11.77 84.16
13_1_20cm_3_scaffold_828
Order: Rhodospirillales (54.55%)
22 21046 bp 64.40 11.23 91.13
13_1_20cm_3_scaffold_1988
Genus: Bradyrhizobium (81.82%)
22 17754 bp 61.11 11.79 78.44
13_1_20cm_3_scaffold_1229
Class: Alphaproteobacteria (52.38%)
21 19073 bp 66.26 11.19 94.45
13_1_20cm_3_scaffold_74
Phylum: Proteobacteria (75%)
20 23738 bp 64.15 15.25 89.03
13_1_20cm_3_scaffold_1067
Class: Alphaproteobacteria (70%)
20 18442 bp 64.99 12.39 86.22
13_1_20cm_3_scaffold_812
Order: Rhodospirillales (50%)
20 19142 bp 65.11 12.89 83.97
13_1_20cm_3_scaffold_4770
Order: Rhodospirillales (68.42%)
19 15051 bp 65.34 12.14 89.32
13_1_20cm_3_scaffold_4671
Genus: Bradyrhizobium (61.11%)
18 13306 bp 58.88 10.41 84.46
13_1_20cm_3_scaffold_6673
Class: Alphaproteobacteria (66.67%)
18 15081 bp 66.16 12.38 90.27
13_1_20cm_3_scaffold_592
Order: Rhodospirillales (94.44%)
18 17961 bp 65.15 10.41 96.24
13_1_20cm_3_scaffold_5233
Class: Betaproteobacteria (61.11%)
18 16194 bp 64.10 9.55 92.20
13_1_20cm_3_scaffold_2465
Order: Rhodospirillales (61.11%)
18 16455 bp 63.17 11.58 73.93
13_1_20cm_3_scaffold_436
Phylum: Proteobacteria (76.47%)
17 16029 bp 65.38 11.73 91.55
13_1_20cm_3_scaffold_10606
Order: Rhodospirillales (64.71%)
17 15084 bp 64.45 11.71 84.94
13_1_20cm_3_scaffold_5776
Phylum: Proteobacteria (58.82%)
17 10772 bp 66.73 11.53 94.33
13_1_20cm_3_scaffold_10177
Class: Alphaproteobacteria (76.47%)
17 14034 bp 65.31 11.45 89.08
13_1_20cm_3_scaffold_13011
Order: Rhizobiales (94.12%)
17 14414 bp 61.44 10.80 90.04
13_1_20cm_3_scaffold_12717
Phylum: Proteobacteria (81.25%)
16 16484 bp 65.57 11.22 90.94
13_1_20cm_3_scaffold_2728
Class: Alphaproteobacteria (56.25%)
16 17336 bp 63.82 10.63 84.78
13_1_20cm_3_scaffold_2786
Class: Alphaproteobacteria (75%)
16 15842 bp 66.17 11.79 92.72
13_1_20cm_3_scaffold_2556
Phylum: Proteobacteria (68.75%)
16 12899 bp 65.54 12.16 86.56
13_1_20cm_3_scaffold_2135
Order: Rhizobiales (62.5%)
16 15860 bp 66.00 12.50 95.50
13_1_20cm_3_scaffold_6263
Order: Rhodospirillales (56.25%)
16 17133 bp 63.87 13.60 90.80
13_1_20cm_3_scaffold_13336
Order: Rhizobiales (50%)
16 19538 bp 65.06 11.00 81.98
13_1_20cm_3_scaffold_132
Class: Alphaproteobacteria (68.75%)
16 18407 bp 65.58 13.24 96.88
13_1_20cm_3_scaffold_8781
Class: Alphaproteobacteria (60%)
15 11032 bp 65.84 12.01 90.75
13_1_20cm_3_scaffold_1173
Class: Alphaproteobacteria (66.67%)
15 14378 bp 64.84 12.55 82.50
13_1_20cm_3_scaffold_19315
Order: Rhodospirillales (60%)
15 13490 bp 62.53 11.05 88.00
13_1_20cm_3_scaffold_2473
Class: Alphaproteobacteria (66.67%)
15 12513 bp 64.53 12.82 84.46
13_1_20cm_3_scaffold_845
Order: Rhodospirillales (66.67%)
15 11509 bp 64.62 12.04 80.55
13_1_20cm_3_scaffold_988
Order: Rhodospirillales (53.33%)
15 11723 bp 65.35 12.50 97.35
13_1_20cm_3_scaffold_1930
Phylum: Acidobacteria (86.67%)
15 18492 bp 59.71 12.65 86.96
13_1_20cm_3_scaffold_6960
Order: Rhizobiales (73.33%)
15 11845 bp 59.12 10.62 81.63
13_1_20cm_3_scaffold_10229
Order: Rhodospirillales (85.71%)
14 11737 bp 63.62 11.93 98.69
13_1_20cm_3_scaffold_4686
Class: Alphaproteobacteria (50%)
14 11957 bp 65.23 12.07 85.08
13_1_20cm_3_scaffold_2210
Phylum: Proteobacteria (85.71%)
14 13965 bp 65.04 10.93 85.20
13_1_20cm_3_scaffold_1171
Order: Rhodospirillales (50%)
14 11247 bp 66.01 11.09 89.65
13_1_20cm_3_scaffold_713
Class: Alphaproteobacteria (71.43%)
14 16110 bp 64.82 11.90 87.78
13_1_20cm_3_scaffold_2973
Order: Rhodospirillales (64.29%)
14 14403 bp 67.20 11.90 90.65
13_1_20cm_3_scaffold_2303
Order: Rhodospirillales (57.14%)
14 12310 bp 65.25 11.23 86.61
13_1_20cm_3_scaffold_8683
Genus: Bradyrhizobium (85.71%)
14 10592 bp 61.20 11.68 93.78
13_1_20cm_3_scaffold_7467
Phylum: Proteobacteria (64.29%)
14 12742 bp 65.61 11.35 91.63
13_1_20cm_3_scaffold_13154
Order: Rhodospirillales (78.57%)
14 9427 bp 64.87 11.58 97.98
13_1_20cm_3_scaffold_883
Class: Alphaproteobacteria (61.54%)
13 12897 bp 65.23 11.46 88.49
Displaying items 1-50 of 162 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.