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13_1_20CM_4_Euryarchaeota_52_7

13_1_20CM_4_Archaea_52_8
In projects: 13_1_20CM_4  |  archaea_ggkbase  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 7.57 Longest contig: 18.87 Kbp Bin length: 1.57 Mbp GC content: 52.36 %
Contigs count: 883 Features count: 1897 rRNAs count: 0 tRNAs count: 5

Genome completeness

partial RP 20 / 55 MC: 13 BSCG 7 / 51 MC: 3 ASCG 21 / 38 MC: 16

Description

Low GC Euryarchaeota-CB

Displaying items 201-250 of 883 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_39531
Species: Halococcus thailandensis (50%)
2 2413 bp 56.86 4.37 94.24
13_1_20cm_4_scaffold_116521
Species: Methanoregula formicica (50%)
2 1521 bp 52.60 5.45 97.63
13_1_20cm_4_scaffold_59577
Species: Methanothermobacter sp. CaT2 (50%)
2 3259 bp 51.33 6.16 67.29
13_1_20cm_4_scaffold_262134
Species: RBG_16_Armatimonadetes_58_9_curated (50%)
2 1015 bp 56.16 5.44 102.27
13_1_20cm_4_scaffold_57504
Species: Thermococcus barophilus (50%)
2 2057 bp 54.11 6.71 90.57
13_1_20cm_4_scaffold_133573
Species: marine sediment metagenome (50%)
2 1432 bp 55.59 5.26 93.85
13_1_20cm_4_scaffold_267669
Species: Pyrinomonas methylaliphatogenes (50%)
2 1001 bp 51.65 4.76 92.91
13_1_20cm_4_scaffold_109844
Species: Archaeoglobus veneficus (50%)
2 1560 bp 53.27 4.02 101.73
13_1_20cm_4_scaffold_171591
Species: Pyrinomonas methylaliphatogenes (100%)
2 1282 bp 54.13 3.13 93.84
13_1_20cm_4_scaffold_175278
Species: RBG_16_Archaea_50_20_curated (100%)
2 1270 bp 52.52 8.89 90.94
13_1_20cm_4_scaffold_247854
Species: Natrinema pellirubrum (50%)
2 1054 bp 51.42 15.48 99.91
13_1_20cm_4_scaffold_26283
Species: CG_ACD39_01 (50%)
2 2862 bp 56.22 6.23 96.75
13_1_20cm_4_scaffold_91837
Species: Archaeoglobus fulgidus (50%)
2 1684 bp 48.34 3.88 87.83
13_1_20cm_4_scaffold_44143
Species: uncultured marine group II/III euryarchaeote AD1000_28_C09 (50%)
2 2303 bp 51.28 7.74 90.92
13_1_20cm_4_scaffold_124820
Species: Thermococcus litoralis (50%)
2 1476 bp 53.25 3.91 82.52
13_1_20cm_4_scaffold_212373
Species: Geoglobus acetivorans (50%)
2 1157 bp 50.99 4.99 80.12
13_1_20cm_4_scaffold_24993
Species: Thermoplasmatales archaeon E-plasma (50%)
2 2924 bp 51.81 6.01 59.40
13_1_20cm_4_scaffold_56126
Species: Parcubacteria bacterium GW2011_GWA1_38_7 (50%)
2 2078 bp 49.04 3.99 43.89
13_1_20cm_4_scaffold_256842
Species: R_Elusimicrobia_59_12 (50%)
2 1029 bp 55.39 4.39 49.27
13_1_20cm_4_scaffold_229887
Species: Natronomonas moolapensis (50%)
2 1105 bp 48.96 5.68 62.17
13_1_20cm_4_scaffold_233341
Species: Geoglobus ahangari (50%)
2 1095 bp 52.79 9.40 100.55
13_1_20cm_4_scaffold_55898
Species: RBG_16_Archaea_50_20_curated (50%)
2 2082 bp 52.88 10.73 62.82
13_1_20cm_4_scaffold_263755
Species: uncultured archaeon (50%)
2 1011 bp 50.45 7.20 100.00
13_1_20cm_4_scaffold_222744
Species: RBG_13_Bathyarchaeota_38_9_curated (100%)
2 1126 bp 47.69 7.13 38.90
13_1_20cm_4_scaffold_120446
Species: marine sediment metagenome (50%)
2 1499 bp 53.57 9.38 83.06
13_1_20cm_4_scaffold_181041
Species: RBG_13_Planctomycetes_50_24_curated (50%)
2 1251 bp 51.48 2.41 95.92
13_1_20cm_4_scaffold_138650
Species: Thermococcus onnurineus (50%)
2 1409 bp 49.40 16.03 88.79
13_1_20cm_4_scaffold_173210
Species: RBG_16_Bathyarchaeota_57_9_curated (50%)
2 2387 bp 53.58 14.09 99.79
13_1_20cm_4_scaffold_178972
Species: MPI_TA06_32_111 (50%)
2 1258 bp 51.19 12.57 93.24
13_1_20cm_4_scaffold_84240
Species: RIFOXYA2_FULL_Elusimicrobia_53_38_curated (50%)
2 1747 bp 51.92 6.75 99.26
13_1_20cm_4_scaffold_211689
Species: Ferroglobus placidus (50%)
2 1160 bp 51.12 8.01 74.74
13_1_20cm_4_scaffold_226434
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
2 1116 bp 53.67 4.72 83.60
13_1_20cm_4_scaffold_17206
Species: Haloarcula sinaiiensis (50%)
2 3401 bp 57.01 5.46 91.65
13_1_20cm_4_scaffold_53828
Species: Archaeoglobus veneficus (50%)
2 2117 bp 51.39 5.81 83.47
13_1_20cm_4_scaffold_243462
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
2 1066 bp 51.13 9.42 81.33
13_1_20cm_4_scaffold_218141
Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)
2 1856 bp 54.69 8.66 101.02
13_1_20cm_4_scaffold_150866
Species: RBG_16_Archaea_50_20_curated (100%)
2 1357 bp 52.03 2.96 95.28
13_1_20cm_4_scaffold_95302
Species: Ferroglobus placidus (50%)
2 1657 bp 56.19 2.88 99.58
13_1_20cm_4_scaffold_117227
Species: RBG_13_Bathyarchaeota_38_9_curated (100%)
2 1517 bp 51.02 5.46 69.02
13_1_20cm_4_scaffold_202937
Species: Methanoculleus bourgensis (50%)
2 1185 bp 52.91 11.65 56.46
13_1_20cm_4_scaffold_99913
Species: R_OD1_Falkowbacteria_45_15 (50%)
2 1625 bp 53.17 5.41 53.54
13_1_20cm_4_scaffold_230816
Species: Methanosaeta concilii (50%)
2 1103 bp 52.04 3.87 93.02
13_1_20cm_4_scaffold_79869
Species: Methanobacterium formicicum (50%)
2 1787 bp 54.56 2.53 92.33
13_1_20cm_4_scaffold_158702
Species: RBG_16_Euryarchaeota_68_12_curated (50%)
2 1327 bp 49.21 3.78 66.09
13_1_20cm_4_scaffold_229435
Species: Candidatus Methanomassiliicoccus intestinalis (50%)
2 1107 bp 53.12 6.80 78.05
13_1_20cm_4_scaffold_56599
Species: Haloferax mucosum (50%)
2 2071 bp 49.69 4.48 55.48
13_1_20cm_4_scaffold_149488
Species: Thermoplasmatales archaeon I-plasma (50%)
2 1363 bp 49.38 3.31 99.71
13_1_20cm_4_scaffold_168841
Species: RBG_16_Bathyarchaeota_48_13_curated (50%)
2 1291 bp 56.31 15.75 99.46
13_1_20cm_4_scaffold_233121
Species: CG_CPR04_01 (50%)
2 1096 bp 36.95 3.89 81.84
13_1_20cm_4_scaffold_35172
Species: Methanotorris igneus (50%)
2 2536 bp 51.58 3.66 89.55
Displaying items 201-250 of 883 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.