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13_1_20CM_4_Euryarchaeota_52_7

13_1_20CM_4_Archaea_52_8
In projects: 13_1_20CM_4  |  archaea_ggkbase  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 7.57 Longest contig: 18.87 Kbp Bin length: 1.57 Mbp GC content: 52.36 %
Contigs count: 883 Features count: 1897 rRNAs count: 0 tRNAs count: 5

Genome completeness

partial RP 20 / 55 MC: 13 BSCG 7 / 51 MC: 3 ASCG 21 / 38 MC: 16

Description

Low GC Euryarchaeota-CB

Displaying items 251-300 of 883 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_115389
Species: marine sediment metagenome (50%)
2 1527 bp 51.67 10.19 81.14
13_1_20cm_4_scaffold_250172
Species: RBG_16_Archaea_50_20_curated (50%)
2 1047 bp 51.10 13.19 83.09
13_1_20cm_4_scaffold_261693
Species: GWF2_Bacteroidetes_35_48_curated (50%)
2 1016 bp 57.19 4.94 85.33
13_1_20cm_4_scaffold_232201
Species: Flavihumibacter solisilvae (50%)
2 1099 bp 56.51 3.65 64.70
13_1_20cm_4_scaffold_77799
Species: Methanocaldococcus infernus (50%)
2 1807 bp 51.69 9.72 53.79
13_1_20cm_4_scaffold_93467
Species: RBG_16_Euryarchaeota_68_12_curated (50%)
2 1672 bp 51.56 3.60 99.40
13_1_20cm_4_scaffold_237273
Species: Thermoplasmatales archaeon Gpl (50%)
2 1084 bp 48.89 6.71 99.91
13_1_20cm_4_scaffold_186355
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
2 1234 bp 51.30 3.86 100.16
13_1_20cm_4_scaffold_29897
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
2 2714 bp 51.22 5.18 81.91
13_1_20cm_4_scaffold_102259
Species: GWC2_OP11_45_19 (50%)
2 1608 bp 54.91 3.90 100.00
13_1_20cm_4_scaffold_214003
Species: Methanomethylovorans hollandica (50%)
2 1153 bp 52.91 6.31 100.95
13_1_20cm_4_scaffold_98307
Species: archaeon GW2011_AR10 (50%)
2 1636 bp 52.69 8.59 63.81
13_1_20cm_4_scaffold_111014
Species: Archaeoglobus fulgidus (50%)
2 1553 bp 53.96 7.92 85.19
13_1_20cm_4_scaffold_47158
Species: Methanobacterium lacus (50%)
2 2240 bp 52.32 4.03 71.65
13_1_20cm_4_scaffold_59830
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)
2 2022 bp 49.60 10.80 89.61
13_1_20cm_4_scaffold_152741
Species: Methanocella paludicola (50%)
2 1350 bp 51.93 3.16 74.67
13_1_20cm_4_scaffold_212854
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
2 1156 bp 51.38 4.13 85.12
13_1_20cm_4_scaffold_54763
Species: R_Betaproteobacteria_64_14 (50%)
2 2100 bp 55.76 5.02 92.43
13_1_20cm_4_scaffold_185899
Species: R_Acidobacteria_68_18 (50%)
2 1236 bp 54.53 3.05 78.16
13_1_20cm_4_scaffold_54302
Species: RBG_16_Archaea_50_20_curated (50%)
2 2108 bp 49.43 4.52 82.12
13_1_20cm_4_scaffold_150187
Species: RBG_16_Archaea_50_20_curated (50%)
2 1360 bp 53.75 6.46 94.19
13_1_20cm_4_scaffold_38176
Species: BJP_IG2069_Methanobacteriales_33_27 (50%)
2 2449 bp 50.02 6.66 53.41
13_1_20cm_4_scaffold_267923
Species: RBG_16_Bathyarchaeota_48_13_curated (50%)
2 1001 bp 51.65 6.02 59.94
13_1_20cm_4_scaffold_167238
Species: RBG_16_Archaea_50_20_curated (100%)
2 1296 bp 52.85 8.52 101.62
13_1_20cm_4_scaffold_51770
Species: Archaeoglobus sulfaticallidus (50%)
2 2152 bp 56.13 17.85 98.42
13_1_20cm_4_scaffold_69050
Species: RBG_16_Anaeromyxobacter_69_14_curated (50%)
2 1903 bp 57.33 4.88 96.64
13_1_20cm_4_scaffold_273749
Species: Methanosarcina acetivorans (50%)
2 2700 bp 56.67 4.09 99.56
13_1_20cm_4_scaffold_115168
Species: marine sediment metagenome (50%)
2 1529 bp 50.88 5.75 34.73
13_1_20cm_4_scaffold_167700
Species: Methanosarcina mazei (50%)
2 1295 bp 56.76 11.05 84.09
13_1_20cm_4_scaffold_65135
Species: RBG_16_Euryarchaeota_68_13_curated (100%)
2 1951 bp 53.56 4.37 92.88
13_1_20cm_4_scaffold_131527
Species: RBG_16_Archaea_50_20_curated (100%)
2 1442 bp 54.16 16.54 99.65
13_1_20cm_4_scaffold_207561
Species: Archaeoglobus sulfaticallidus (50%)
2 1171 bp 52.52 6.64 72.76
13_1_20cm_4_scaffold_102268
Species: Methanosarcina horonobensis (50%)
2 1608 bp 51.31 2.03 99.25
13_1_20cm_4_scaffold_169778
Species: Methanocella conradii (50%)
2 1288 bp 56.29 2.73 99.69
13_1_20cm_4_scaffold_59148
Species: Halovivax ruber (50%)
2 2031 bp 49.93 5.81 67.80
13_1_20cm_4_scaffold_61220
Species: Candidatus Nitrososphaera evergladensis (50%)
2 2002 bp 52.05 12.04 62.49
13_1_20cm_4_scaffold_153167
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated (50%)
2 1348 bp 54.01 4.28 70.33
13_1_20cm_4_scaffold_233599
Species: Ferroplasma sp. Type II (50%)
2 1095 bp 51.69 4.36 94.79
13_1_20cm_4_scaffold_195813
Species: RBG_16_Chloroflexi_64_43_curated (50%)
2 1206 bp 54.56 4.79 52.74
13_1_20cm_4_scaffold_25687
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)
2 3977 bp 52.07 11.49 90.29
13_1_20cm_4_scaffold_146046
Species: RBG_16_Archaea_50_20_curated (100%)
2 1377 bp 55.05 4.92 92.81
13_1_20cm_4_scaffold_133605
Species: Thermoplasmatales archaeon Gpl (50%)
2 1432 bp 49.44 15.95 99.93
13_1_20cm_4_scaffold_219799
Species: Nitrolancea hollandica (50%)
2 1135 bp 51.45 2.87 80.35
13_1_20cm_4_scaffold_241896
Species: halophilic archaeon J07HX64 (50%)
2 1071 bp 54.81 2.81 77.31
13_1_20cm_4_scaffold_181300
Species: Thermoplasmatales archaeon E-plasma (50%)
2 1251 bp 48.36 5.82 92.09
13_1_20cm_4_scaffold_36112
Species: Thermoplasmatales archaeon I-plasma (50%)
2 2508 bp 53.31 11.71 57.89
13_1_20cm_4_scaffold_178307
Species: RBG_13_Bathyarchaeota_38_9_curated (100%)
2 1260 bp 52.70 11.95 84.76
13_1_20cm_4_scaffold_139139
Species: Ferroplasma acidarmanus (50%)
2 1406 bp 55.05 4.82 92.18
13_1_20cm_4_scaffold_119325
Species: marine sediment metagenome (50%)
2 1505 bp 55.95 6.00 99.67
13_1_20cm_4_scaffold_61227
Species: Chthoniobacter flavus (50%)
2 2002 bp 56.59 4.89 88.41
Displaying items 251-300 of 883 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.