ggKbase home page

rifcsphigho2_01_scaffold_8393_7

Organism: RIFCSPHIGHO2_01_FULL_Archaea_Pacearchaeota_33_47

partial RP 29 / 55 MC: 3 BSCG 17 / 51 ASCG 29 / 38 MC: 1
Location: comp(3031..6561)

Top 3 Functional Annotations

Value Algorithm Source
rpoA1; DNA-directed RNA polymerase subunit A' (EC:2.7.7.6); K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] Tax=CG_Pacearch_05 similarity UNIPROT
DB: UniProtKB
  • Identity: 68.0
  • Coverage: 999.99
  • Bit_score: 1606
  • Evalue 0.0
DNA-directed RNA polymerase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYR8_METFV id=5103777 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome similarity UNIREF
DB: UNIREF100
  • Identity: 56.3
  • Coverage: 819.0
  • Bit_score: 916
  • Evalue 3.50e-263
DNA-directed RNA polymerase similarity KEGG
DB: KEGG
  • Identity: 56.3
  • Coverage: 819.0
  • Bit_score: 916
  • Evalue 9.90e-264

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

CG_Pacearch_05 → Pacearchaeota → Archaea

Sequences

DNA sequence
Length: 3531
ATGGCAAAAGCAATCCGAAAACAAGTTGAAAGTTTACAATTTACACTTTTAAGTCCTGAAGAAATCAAGAAAATTGCAAAAGCAAAAATAGTGACTCCTGAATTGTACGACGTGGATGGTTATCCTGTTGATGGCGGTTTAATGGATTTGCGATTAGGAGCGATTGATCCTGGAGTAAGATGTAGAACGTGCGGTGGAAGATTGAAAGAATGTTTAGGGCACCCTGGAAGTATTGAGTTAGCTCGACCGGTTTTCCATATTAAATATATTCCTGTTGTTGAATTATTCTTGAGATGTTATTGTACTGAGTGTAATAAATTAATGGTTAAAGAAAAAGATATGAGAAAATACAAAACAATAAAAGATAGATTGAAGCGTGCAAAGGATGCAAAAAAATGTCCATATTGTTTAGCTAATCAGGAAAAAATTAAATTGCAAAAACCTGCTACGTTTAAAATTGGTAAAAGAAGATTATTCCCGACGGAAATTAGAGAAATGTTAGCGAGAATTCCTGATGAAGAGGCAAAGCTTGCCGGTATCGATCCAAAAATATTTAGACCTGAATGGTCTGTGTTAACTTTATTATTAGTTCCTTCTGTAACTGTGCGACCTTCTATAACTTTAGAATCTGGAGAACGAAGCGAGGATGATTTGACACATAAGCTTTCAGATATTATTCGAGCAAATCAGCGATTATGGGAAAATTTGAATGCAGGAGCTCCCGAAGTTATTATCGAAGATTTGTGGGATTTATTGCAGTATCATATTACAACTTTTTTCGACAATTCAATTGCTAAAATTCCGCCTGCTCGACATAGAAGTGGACAGCCGTTGAAAACTATAACTGAAAGAATTAAGGGTAAAGAAGGAAGAATCCGACATAATTTGGCAGGAAAACGAGTTAATTTCTCCTCGAGAACAGTTATTTCTCCTGATCCAGCATTGAAAATTAATGAAATTGGAGTTCCGTTTGAAATTGCAAAAATATTAACAGTTAATGAGAAAGTTACGACGACTAATCTAGAAAAACTTAAAAAAATAATATTAATTGAAACTTATCCTACTGCAAATTATATTATTCGACCTGATGGCAGACGAAAAAGAATTACTTTGGATTTGAAAAAAGAAATTTTGGAAGAATTAAAACCTGGATATGTTGTCGAACGACAATTAGTTGATGGAGATATTGTATTATTCAACAGACATCCTTCGTTGCATAAAGCTTCTTTAATGTCTCATTTTGTTAAAGTTCTTCCGTATAGAACTTTTAGAATTCATCCAGCTACAGCGCCTCCATACAATGCAGATTTTGACGGAGATGAGATGAATATCCATGTTCCACAAACTGAAGAAGCACGAGCTGAAGCAAAAGTTTTGATGAATGTGAATAATAATTTAATGTCTTGTAAGGATAATAGTAATTTAATGGGTAATATTGTTGACGCTGTTACCGGAAATTTCTTGTTAAGTAAAGATACTATTTCACGTGCAGATGCTTCACAGCTTTTGTTTAGTATAGGTATTATTAAAGAAAATTTGAAACAAAGATTAACTGGAACAGAGCTTATCTCTGAAATCTTGCCGAAGATCGATTATAAAGCTAAAACTAAAACTGGAGATTCATTTTCTATAAAGAATGGTAAGATTGAAAGTGGCTTAGTTGATGAAATGGTTTTTGGCGTCGAATCTGGTAATTTATTAAAAGAAATCGATAAGCAATTGGGTCGGGATAAAGCCGTAGACATTTTAGAAAAATCTTTTAGAATAGGTACAAAATATTTGTCTAATCATGGATTTACTATTTCATTGGAAGATTTGAATGTTAATGACAAAGTTCGAAAATCTACAGATGAAATTATTAAAGAAGCTGAAGATAAGACGCAGGAAATTATTGATAAGTTCTATGACGGTTCTTTAGAAATTATTCCGGGAAAAACATCTGAAGAAACTCGTGAGATCAAAATATTGCAGACATTAAATGGAATCAGAACAAAAATTGGAAAAATTGTTAGTAAAGAAGTTGACAAAAATAATCCGATCAGTATTATGATGGATTCTGGTTCTGGTGGAAGTGTCTTGAATATTACCCAGATGGCATGTTGTGTTGGACAACAAGCATTGTGGGCAAAACGTATTGGTATTGGATTTAGTAATCGAACATTATCATTCTTCAAAGAACATGATTTATCGCCGAGGGCAAAAGGATTTATTTATAGTTCTTTTATCACCGGATTAAAACCTTACGAATTTTTCTTTGGAGCTATTACTGGAAGAGACGCTTTAATGGATACTGCATTACGTACACCTAAATCCGGTTATCTATATCGACGATTAGCAAATGCTTTACAGGATATTCGTGTTGAATATGATAAAACCGTTCGTGATGGATCTGGTAGAATAATTCAATTCCGTTATGGAGAGGATGGAAAAGATGTTGCTGAATTACATAGAGATAAGGATATTTCTCCGGGAGAGGCAATTGGAATTGTTACTGCTCAATCATTTGGAGAACCGTCGACACAGATGGCATTAAACGTATTCCACTTCGCTGGAGTTGCAGAGATGCAGGTTACCTCGGGTCTACCTCGTTTGATTGAAATATTTGATGCTCGACGAACACCTTCTACGCCAGAAATGGAAATCTTCCTCAAAAAAGAATATAACGATGAAAAAAATGCGAGAGTTTTAGCTGAAAAAATTAAAGAAATAAGATTAAAGGATATTGTTAAAGAAATTAAAATTAATTTTTCTGATAAAAAAATTGAAGCAACTGTTGATAATGAAGCAGTACGTCGAATTCACACGACTGTTGAAACTATTGTTAAGAAATTAAATGAAGGCGGAAAAAAATGTAAAGTTTCCGGCAATATCATAATTTTTGATGCGCACAATTTAGATTTCAAGGAAATTTATAAATTAAAAGAAAAAATGAAAGATACACAGATTTCTGGAATTAAAGGAGTTTCACAAATTCTTGTCGTTAATAGAGACGGCGATTATATAATTTTAACAGCAGGAACAAATCTGAAAGAAATTATCAAATTTAAGGAAGTTGAAGTTCCTCGAACAATCAGCAACGATATTCATGAAGTTGAAGAAGTGTTTGGCGTTGAAGTCGCACGAGCTACGGTTATTAGAGAAATTGAGAAAGTTACCAATTCGCAAGGTTTGAATATTGATCGACGACATTCACAGTTAATTGCTGATGCGATGACTTCAGATGGAAATGTTCGAGGAATAACAAGAATGGGAATTATTTCGCAAAAATCTTCTATATTGGCAAGAGCAAGTTTCGAGACACCAATTAAGCAATTTGTAAATGCAACATTGAAGGATAATAAAGATGAATTGAATTCAGTTATTGAGAACATAATCTTAAATCAACCTGTTCCAGTTGGAACTGGACTTCCTGGATTAATGGTTGAAGTTACTGGTGCTTTAGTAGATCATAAACAAAAGAAAGATAAAAGTGTAGAGTATTTAACTCGAGGAACAAAAGACACTTCTTCACATACGAATGAACCGATTTAG
PROTEIN sequence
Length: 1177
MAKAIRKQVESLQFTLLSPEEIKKIAKAKIVTPELYDVDGYPVDGGLMDLRLGAIDPGVRCRTCGGRLKECLGHPGSIELARPVFHIKYIPVVELFLRCYCTECNKLMVKEKDMRKYKTIKDRLKRAKDAKKCPYCLANQEKIKLQKPATFKIGKRRLFPTEIREMLARIPDEEAKLAGIDPKIFRPEWSVLTLLLVPSVTVRPSITLESGERSEDDLTHKLSDIIRANQRLWENLNAGAPEVIIEDLWDLLQYHITTFFDNSIAKIPPARHRSGQPLKTITERIKGKEGRIRHNLAGKRVNFSSRTVISPDPALKINEIGVPFEIAKILTVNEKVTTTNLEKLKKIILIETYPTANYIIRPDGRRKRITLDLKKEILEELKPGYVVERQLVDGDIVLFNRHPSLHKASLMSHFVKVLPYRTFRIHPATAPPYNADFDGDEMNIHVPQTEEARAEAKVLMNVNNNLMSCKDNSNLMGNIVDAVTGNFLLSKDTISRADASQLLFSIGIIKENLKQRLTGTELISEILPKIDYKAKTKTGDSFSIKNGKIESGLVDEMVFGVESGNLLKEIDKQLGRDKAVDILEKSFRIGTKYLSNHGFTISLEDLNVNDKVRKSTDEIIKEAEDKTQEIIDKFYDGSLEIIPGKTSEETREIKILQTLNGIRTKIGKIVSKEVDKNNPISIMMDSGSGGSVLNITQMACCVGQQALWAKRIGIGFSNRTLSFFKEHDLSPRAKGFIYSSFITGLKPYEFFFGAITGRDALMDTALRTPKSGYLYRRLANALQDIRVEYDKTVRDGSGRIIQFRYGEDGKDVAELHRDKDISPGEAIGIVTAQSFGEPSTQMALNVFHFAGVAEMQVTSGLPRLIEIFDARRTPSTPEMEIFLKKEYNDEKNARVLAEKIKEIRLKDIVKEIKINFSDKKIEATVDNEAVRRIHTTVETIVKKLNEGGKKCKVSGNIIIFDAHNLDFKEIYKLKEKMKDTQISGIKGVSQILVVNRDGDYIILTAGTNLKEIIKFKEVEVPRTISNDIHEVEEVFGVEVARATVIREIEKVTNSQGLNIDRRHSQLIADAMTSDGNVRGITRMGIISQKSSILARASFETPIKQFVNATLKDNKDELNSVIENIILNQPVPVGTGLPGLMVEVTGALVDHKQKKDKSVEYLTRGTKDTSSHTNEPI*