ggKbase home page
Advanced Search
Search Help

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

BJP_Ig2157_Hor_140_2014_Thermoplasmata_53_6

07V140M03_2014_Euryarchaeota_52_6
In projects: 07V140M03_2014  |  diaphorachaeota  |  archaea_ggkbase  |  horonobe_genomes

Consensus taxonomy: Euryarchaeota  →  Archaea

Metagenomic Context

Parent: BJP_IG2157_UNK

Properties

Avg. coverage: 6.27 Longest contig: 13.27 Kbp Bin length: 776.56 Kbp GC content: 52.38 %
Contigs count: 246 Features count: 885 rRNAs count: 0 tRNAs count: 11

Genome completeness

partial RP 25 / 55 BSCG 9 / 51 ASCG 28 / 38 MC: 3

Description

Fragmented. May not be clean -->curated, please check (YA) Thermoplasmata archaeon HGW-Thermoplasmata-2 (possibly novel; 61.1% of identity based on NCBI blast search) old name; BJP_IG2157_Euryarchaeota_53_6

Displaying items 1-50 of 246 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
bjp_ig2157_scaffold_26705
Species: RBG_16_Euryarchaeota_62_10_curated (100%)
1 1083 bp 48.29 5.82 41.55
bjp_ig2157_scaffold_9754
Species: Aciduliprofundum boonei (100%)
1 2376 bp 50.34 6.12 50.51
bjp_ig2157_scaffold_25128
Species: Methanocella paludicola (100%)
1 1139 bp 54.08 2.77 55.58
bjp_ig2157_scaffold_9981
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)
2 2337 bp 50.24 4.81 57.77
bjp_ig2157_scaffold_22195
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
2 1265 bp 48.93 7.00 59.76
bjp_ig2157_scaffold_24136
Species: RBG_19FT_COMBO_Euryarchaeota_56_21_curated (100%)
1 1179 bp 51.74 7.38 63.10
bjp_ig2157_scaffold_7842
Species: RBG_19FT_COMBO_Euryarchaeota_56_21_curated (100%)
1 2791 bp 56.50 8.33 65.35
bjp_ig2157_scaffold_22258
Species: Methanobrevibacter sp. AbM4 (50%)
2 1262 bp 53.96 4.87 67.04
bjp_ig2157_scaffold_10195
Species: Candidatus Methanomassiliicoccus intestinalis (50%)
2 2299 bp 51.67 5.94 67.42
bjp_ig2157_scaffold_25187
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
2 1137 bp 53.74 6.60 68.07
bjp_ig2157_scaffold_6741
Species: Thermoplasmatales archaeon SCGC AB-539-N05 (50%)
2 3107 bp 49.73 4.63 69.23
bjp_ig2157_scaffold_18494
Species: BJP_IG2069_Methanobacteriales_33_27 (100%)
2 1462 bp 46.51 4.41 69.36
bjp_ig2157_scaffold_1762
Phylum: Euryarchaeota (60%)
10 7691 bp 52.83 7.43 69.82
bjp_ig2157_scaffold_4487
Phylum: Euryarchaeota (57.14%)
7 4093 bp 52.85 4.95 70.00
bjp_ig2157_scaffold_10879
Species: Archaeoglobus veneficus (50%)
2 2192 bp 50.27 5.41 70.76
bjp_ig2157_scaffold_17206
Order: Thermoplasmatales (50%)
4 1549 bp 50.03 5.42 70.88
bjp_ig2157_scaffold_22038
Species: RBG_13_Euryarchaeota_31_8_curated (100%)
1 1272 bp 54.32 6.13 72.41
bjp_ig2157_scaffold_9628
Species: Thermoplasmatales archaeon SCGC AB-540-F20 (50%)
2 2400 bp 50.50 5.19 72.63
bjp_ig2157_scaffold_12793
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
1 1945 bp 50.85 7.02 73.26
bjp_ig2157_scaffold_23503
Species: Thermoplasmatales archaeon SCGC AB-540-F20 (50%)
2 1206 bp 52.24 6.09 73.88
bjp_ig2157_scaffold_18602
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
2 1455 bp 52.37 8.04 74.02
bjp_ig2157_scaffold_29125
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
2 1004 bp 51.89 5.53 74.70
bjp_ig2157_scaffold_9895
Species: BJP_IG2158_Thermoplasmatales_53_16 (66.67%)
3 2352 bp 53.23 7.40 75.13
bjp_ig2157_scaffold_24595
Species: Methanothermus fervidus (50%)
2 1160 bp 46.55 6.34 75.26
bjp_ig2157_scaffold_13835
Species: Thermoplasmatales archaeon SCGC AB-540-F20 (50%)
2 1835 bp 51.06 6.78 75.53
bjp_ig2157_scaffold_15089
Species: Thermoplasmatales archaeon SCGC AB-539-N05 (50%)
2 1718 bp 55.24 4.45 75.61
bjp_ig2157_scaffold_2274
Phylum: Euryarchaeota (57.14%)
7 6454 bp 52.76 5.86 75.67
bjp_ig2157_scaffold_18216
Species: Thermococcus gammatolerans (50%)
2 1479 bp 55.98 3.55 76.06
bjp_ig2157_scaffold_5699
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
2 3477 bp 54.96 5.95 76.27
bjp_ig2157_scaffold_2615 6 5836 bp 50.22 6.30 76.34
bjp_ig2157_scaffold_27177
Species: Salinarchaeum sp. Harcht-Bsk1 (100%)
1 1067 bp 50.05 6.75 76.48
bjp_ig2157_scaffold_7668
Phylum: Euryarchaeota (50%)
4 2836 bp 46.30 5.45 77.22
bjp_ig2157_scaffold_2951
Phylum: Euryarchaeota (55.56%)
9 5400 bp 51.93 7.17 77.43
bjp_ig2157_scaffold_10917
Species: Thermoplasmatales archaeon SCGC AB-539-N05 (100%)
2 2188 bp 54.66 5.42 78.43
bjp_ig2157_scaffold_2310
Phylum: Euryarchaeota (57.14%)
7 6364 bp 48.99 6.27 78.91
bjp_ig2157_scaffold_25505
Species: Methanocella arvoryzae (100%)
1 1126 bp 45.83 5.20 79.13
bjp_ig2157_scaffold_14928
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
1 1733 bp 53.32 4.15 79.28
bjp_ig2157_scaffold_1908
Phylum: Euryarchaeota (80%)
10 7237 bp 51.67 5.87 79.87
bjp_ig2157_scaffold_29079
Species: RBG_13_Euryarchaeota_61_15_curated (100%)
1 1006 bp 51.89 6.86 79.92
bjp_ig2157_scaffold_26704
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
2 1083 bp 48.57 6.23 80.33
bjp_ig2157_scaffold_2543
Phylum: Euryarchaeota (55.56%)
9 5946 bp 47.71 6.03 80.47
bjp_ig2157_scaffold_24923
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
1 1147 bp 52.31 3.53 80.56
bjp_ig2157_scaffold_23565
Species: RBG_16_Euryarchaeota_41_19_curated (50%)
2 1203 bp 49.88 3.24 80.80
bjp_ig2157_scaffold_15006
Phylum: Euryarchaeota (50%)
4 1725 bp 50.72 5.04 80.93
bjp_ig2157_scaffold_25388
Species: Methanocaldococcus fervens (50%)
2 1130 bp 49.12 4.38 80.97
bjp_ig2157_scaffold_28116
Species: Aciduliprofundum boonei (100%)
1 1036 bp 52.41 4.63 81.08
bjp_ig2157_scaffold_4358
Domain: Archaea (100%)
3 4149 bp 52.78 6.65 81.42
bjp_ig2157_scaffold_10018
Phylum: Euryarchaeota (66.67%)
3 2329 bp 53.80 6.70 81.49
bjp_ig2157_scaffold_5055
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
4 3771 bp 53.46 8.11 81.78
bjp_ig2157_scaffold_2797
Phylum: Euryarchaeota (55.56%)
9 5576 bp 53.64 7.75 81.83
Displaying items 1-50 of 246 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.