ggKbase | organisms

Consensus taxonomy: Candidatus Nitrososphaera gargensis → Nitrososphaera → Nitrososphaerales → Nitrososphaeria → Thaumarchaeota → Archaea

Taxonomy override: Thaumarchaeota

Metagenomic Context

Parent: 13_1_40cm_3_UNK

Properties

Avg. coverage: 5.53 Longest contig: 62.77 Kbp Bin length: 1.63 Mbp GC content: 49.56 %

Contigs count: 370 Features count: 2046 rRNAs count: 0 tRNAs count: 27

Genome completeness

near complete RP 30 / 55 MC: 2 BSCG 17 / 51 MC: 1 ASCG 35 / 38 MC: 3

Displaying items 251-300 of 370 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_3_scaffold_243864 Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)	2	1191 bp	53.06	5.29	98.24
13_1_40cm_3_scaffold_269332 Species: Nitrososphaera viennensis (50%)	2	1132 bp	49.29	5.17	83.22
13_1_40cm_3_scaffold_205915 Species: Candidatus Nitrososphaera gargensis (100%)	2	1298 bp	51.54	4.62	73.04
13_1_40cm_3_scaffold_184613 Species: Nitrososphaera viennensis (50%)	2	1372 bp	50.36	3.50	92.27
13_1_40cm_3_scaffold_316879 Species: Nitrososphaera viennensis (50%)	2	1008 bp	52.88	5.21	56.25
13_1_40cm_3_scaffold_169524 Species: Candidatus Nitrososphaera gargensis (100%)	2	2084 bp	49.66	5.69	96.88
13_1_40cm_3_scaffold_65109 Species: Nitrososphaera viennensis (50%)	2	2247 bp	51.71	6.41	95.99
13_1_40cm_3_scaffold_214850 Species: Candidatus Nitrososphaera gargensis (50%)	2	1270 bp	52.28	3.54	71.34
13_1_40cm_3_scaffold_161066 Species: Candidatus Nitrososphaera evergladensis (50%)	2	1466 bp	51.71	7.47	100.68
13_1_40cm_3_scaffold_309026 Species: uncultured marine thaumarchaeote KM3_47_C08 (50%)	2	1030 bp	53.20	6.41	76.31
13_1_40cm_3_scaffold_81745 Species: RBG_16_Archaea_50_20_curated (50%)	2	2023 bp	52.30	5.34	79.34
13_1_40cm_3_scaffold_161844 Species: RBG_16_Thaumarchaeota_49_8_curated (50%)	2	1463 bp	50.03	4.31	94.94
13_1_40cm_3_scaffold_301473 Species: Candidatus Nitrososphaera gargensis (50%)	2	1052 bp	52.19	4.99	47.62
13_1_40cm_3_scaffold_283988 Species: Candidatus Nitrososphaera gargensis (100%)	2	1098 bp	48.18	4.10	74.04
13_1_40cm_3_scaffold_112519 Species: Candidatus Nitrososphaera gargensis (50%)	2	1740 bp	51.95	4.91	89.83
13_1_40cm_3_scaffold_313797 Species: Candidatus Nitrososphaera gargensis (50%)	2	1017 bp	53.59	3.54	103.25
13_1_40cm_3_scaffold_157830 Species: Candidatus Nitrososphaera gargensis (100%)	2	1756 bp	49.26	4.01	90.72
13_1_40cm_3_scaffold_240277 Species: RBG_16_Archaea_50_20_curated (50%)	2	1200 bp	53.25	4.38	80.50
13_1_40cm_3_scaffold_546710 Species: Candidatus Nitrososphaera gargensis (50%)	2	1041 bp	49.57	4.76	69.16
13_1_40cm_3_scaffold_143051 Species: Nitrososphaera viennensis (50%)	2	1551 bp	52.10	4.06	56.09
13_1_40cm_3_scaffold_266691 Species: Candidatus Nitrososphaera evergladensis (50%)	2	1138 bp	52.90	4.35	79.61
13_1_40cm_3_scaffold_220360 Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)	2	1984 bp	52.47	5.59	90.88
13_1_40cm_3_scaffold_154201 Species: Nitrososphaera viennensis (50%)	2	1497 bp	51.64	5.91	96.19
13_1_40cm_3_scaffold_56659 Species: Nitrososphaera viennensis (50%)	2	2391 bp	52.49	7.40	97.99
13_1_40cm_3_scaffold_344887 Species: Candidatus Nitrososphaera gargensis (50%)	2	1387 bp	49.82	4.54	93.87
13_1_40cm_3_scaffold_196069 Species: RBG_16_Thaumarchaeota_49_8_curated (50%)	2	1331 bp	51.77	5.52	55.22
13_1_40cm_3_scaffold_109590 Species: RBG_16_Bathyarchaeota_48_13_curated (50%)	2	2735 bp	52.10	4.66	77.88
13_1_40cm_3_scaffold_282622 Species: Candidatus Nitrososphaera gargensis (50%)	2	1101 bp	50.59	5.04	43.32
13_1_40cm_3_scaffold_156032 Species: Candidatus Nitrososphaera gargensis (50%)	2	1488 bp	53.02	4.03	31.85
13_1_40cm_3_scaffold_138191 Species: uncultured marine thaumarchaeote KM3_04_H06 (50%)	2	1577 bp	53.96	4.19	87.32
13_1_40cm_3_scaffold_151484 Species: Candidatus Nitrososphaera gargensis (50%)	2	1509 bp	51.42	4.08	68.99
13_1_40cm_3_scaffold_186139 Species: uncultured marine thaumarchaeote KM3_55_F05 (50%)	2	2341 bp	52.37	5.51	55.49
13_1_40cm_3_scaffold_427341 Species: Candidatus Nitrososphaera gargensis (50%)	2	1170 bp	50.85	5.77	102.56
13_1_40cm_3_scaffold_213488 Species: uncultured marine thaumarchaeote KM3_55_F05 (50%)	2	2266 bp	51.68	5.76	97.31
13_1_40cm_3_scaffold_86434 Species: RBG_16_Thaumarchaeota_49_8_curated (50%)	2	1972 bp	54.31	5.70	95.39
13_1_40cm_3_scaffold_205967 Species: RBG_16_Archaea_50_20_curated (50%)	2	1634 bp	52.94	3.58	88.31
13_1_40cm_3_scaffold_117523 Species: Candidatus Nitrososphaera gargensis (50%)	2	1704 bp	49.53	3.79	66.73
13_1_40cm_3_scaffold_262578 Species: RBG_13_Bathyarchaeota_38_9_curated (50%)	2	1148 bp	50.35	4.05	64.29
13_1_40cm_3_scaffold_251772 Species: Nitrososphaera viennensis (50%)	2	1173 bp	53.11	4.09	90.79
13_1_40cm_3_scaffold_225506 Species: Candidatus Nitrososphaera evergladensis (100%)	2	1239 bp	52.78	6.66	82.32
13_1_40cm_3_scaffold_148323 Species: Candidatus Nitrososphaera evergladensis (50%)	2	1525 bp	52.00	7.18	84.98
13_1_40cm_3_scaffold_13134 Species: Nitrososphaera viennensis (50%)	2	4478 bp	47.90	4.32	77.65
13_1_40cm_3_scaffold_38048 Species: RBG_16_Archaea_50_20_curated (50%)	2	2852 bp	52.98	5.73	75.95
13_1_40cm_3_scaffold_278764 Species: Candidatus Nitrososphaera gargensis (50%)	2	1111 bp	51.31	6.89	78.58
13_1_40cm_3_scaffold_13984 Species: RBG_13_Bathyarchaeota_38_9_curated (50%)	2	4356 bp	51.86	6.71	99.04
13_1_40cm_3_scaffold_291955 Species: RBG_16_Archaea_50_20_curated (50%)	2	1594 bp	51.76	5.83	98.81
13_1_40cm_3_scaffold_285931 Species: uncultured marine thaumarchaeote KM3_55_F05 (50%)	2	1093 bp	52.70	3.98	99.09
13_1_40cm_3_scaffold_23790 Species: Candidatus Nitrososphaera gargensis (50%)	2	3481 bp	53.09	3.88	95.23
13_1_40cm_3_scaffold_398747 Species: RBG_16_Archaea_50_20_curated (100%)	2	1387 bp	47.51	7.46	93.22
13_1_40cm_3_scaffold_234425 Species: Candidatus Nitrososphaera gargensis (50%)	2	1215 bp	46.91	6.79	88.40

Displaying items 251-300 of 370 in total

13_1_40CM_3_Thaumarchaeota_50_5

13_1_40CM_3_Candidatus_Nitrososphaera_gargensis_50_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_40CM_3_Thaumarchaeota_50_5

13_1_40CM_3_Candidatus_Nitrososphaera_gargensis_50_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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