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QH_3_Halobacteriales_66_26

In projects: QH_3  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: QH_3_UNK

Properties

Avg. coverage: 26.38 Longest contig: 26.21 Kbp Bin length: 2.11 Mbp GC content: 66.05 %
Contigs count: 340 Features count: 2409 rRNAs count: 0 tRNAs count: 20

Genome completeness

partial RP 32 / 55 MC: 5 BSCG 21 / 51 MC: 1 ASCG 25 / 38 MC: 3
Displaying items 1-50 of 340 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_3_scaffold_398
Order: Halobacteriales (78.79%)
33 16906 bp 66.64 37.80 93.84
qh_3_scaffold_1337
Order: Halobacteriales (60%)
25 19551 bp 63.97 24.72 87.40
qh_3_scaffold_372
Order: Halobacteriales (54.17%)
24 26212 bp 65.13 28.06 89.97
qh_3_scaffold_303
Order: Halobacteriales (72.73%)
22 16656 bp 66.86 24.83 88.48
qh_3_scaffold_585
Order: Halobacteriales (59.09%)
22 16467 bp 65.54 30.68 85.92
qh_3_scaffold_291
Class: Halobacteria (55%)
20 23636 bp 61.91 30.31 88.78
qh_3_scaffold_449
Order: Halobacteriales (63.16%)
19 16909 bp 65.52 22.35 82.29
qh_3_scaffold_175
Class: Halobacteria (94.44%)
18 18351 bp 61.70 20.55 87.82
qh_3_scaffold_153
Class: Halobacteria (88.89%)
18 19957 bp 67.39 20.67 89.77
qh_3_scaffold_1077
Class: Halobacteria (76.47%)
17 9423 bp 63.11 31.61 81.98
qh_3_scaffold_365
Class: Halobacteria (100%)
17 14865 bp 66.22 23.84 83.29
qh_3_scaffold_1014
Class: Halobacteria (88.24%)
17 11527 bp 69.84 33.64 90.75
qh_3_scaffold_237
Order: Halobacteriales (64.71%)
17 17011 bp 66.73 32.46 85.85
qh_3_scaffold_978
Order: Halobacteriales (50%)
16 19593 bp 66.83 23.96 90.98
qh_3_scaffold_515
Class: Halobacteria (81.25%)
16 15137 bp 63.31 22.63 90.30
qh_3_scaffold_974
Order: Halobacteriales (50%)
16 11098 bp 65.89 29.58 78.37
qh_3_scaffold_363
Order: Halobacteriales (60%)
15 12130 bp 66.17 28.62 89.80
qh_3_scaffold_557
Order: Halobacteriales (66.67%)
15 11213 bp 67.18 27.99 82.41
qh_3_scaffold_369
Class: Halobacteria (78.57%)
14 13393 bp 66.40 27.75 83.46
qh_3_scaffold_471
Order: Halobacteriales (71.43%)
14 14056 bp 67.44 32.16 84.52
qh_3_scaffold_1268
Class: Halobacteria (85.71%)
14 11871 bp 66.78 24.70 80.92
qh_3_scaffold_499
Order: Halobacteriales (69.23%)
13 8672 bp 69.56 30.67 91.95
qh_3_scaffold_912
Order: Halobacteriales (76.92%)
13 9979 bp 65.29 28.13 83.03
qh_3_scaffold_523
Order: Halobacteriales (61.54%)
13 12658 bp 68.09 31.50 88.81
qh_3_scaffold_572
Order: Halobacteriales (69.23%)
13 8577 bp 68.09 25.75 86.71
qh_3_scaffold_1504
Order: Halobacteriales (76.92%)
13 14408 bp 67.89 27.71 88.60
qh_3_scaffold_573
Class: Halobacteria (100%)
13 12660 bp 64.58 26.22 78.10
qh_3_scaffold_923
Order: Halobacteriales (69.23%)
13 10868 bp 66.27 27.18 77.95
qh_3_scaffold_305
Order: Halobacteriales (61.54%)
13 15152 bp 69.34 28.29 76.96
qh_3_scaffold_1259
Class: Halobacteria (69.23%)
13 7441 bp 67.22 24.50 85.03
qh_3_scaffold_1477
Order: Halobacteriales (61.54%)
13 10750 bp 65.39 32.88 84.33
qh_3_scaffold_1169
Order: Halobacteriales (58.33%)
12 13343 bp 67.01 28.02 83.30
qh_3_scaffold_615
Order: Haloferacales (66.67%)
12 8309 bp 65.58 27.11 78.28
qh_3_scaffold_1011
Order: Halobacteriales (50%)
12 8887 bp 65.82 28.03 73.83
qh_3_scaffold_1389
Class: Halobacteria (91.67%)
12 8327 bp 65.29 18.07 85.28
qh_3_scaffold_781
Order: Natrialbales (50%)
12 10176 bp 67.76 26.50 89.39
qh_3_scaffold_718
Class: Halobacteria (91.67%)
12 10156 bp 68.05 30.82 77.60
qh_3_scaffold_2206
Order: Halobacteriales (75%)
12 8374 bp 65.21 29.06 88.45
qh_3_scaffold_334
Order: Halobacteriales (91.67%)
12 9282 bp 62.96 26.98 90.05
qh_3_scaffold_2911
Order: Halobacteriales (54.55%)
11 5237 bp 66.26 21.46 76.93
qh_3_scaffold_1089
Species: halophilic archaeon J07HX64 (54.55%)
11 9180 bp 66.00 27.56 87.84
qh_3_scaffold_1288
Order: Halobacteriales (63.64%)
11 8818 bp 67.40 24.08 75.73
qh_3_scaffold_937
Order: Halobacteriales (63.64%)
11 8851 bp 67.16 37.52 91.35
qh_3_scaffold_801
Class: Halobacteria (90.91%)
11 9518 bp 68.30 27.00 92.48
qh_3_scaffold_895
Order: Halobacteriales (63.64%)
11 8996 bp 64.48 29.00 80.67
qh_3_scaffold_1305
Order: Halobacteriales (72.73%)
11 8387 bp 67.14 22.07 80.80
qh_3_scaffold_963
Order: Natrialbales (54.55%)
11 8700 bp 66.49 30.23 89.52
qh_3_scaffold_1672
Class: Halobacteria (54.55%)
11 5974 bp 64.51 26.95 70.41
qh_3_scaffold_282
Order: Halobacteriales (54.55%)
11 12880 bp 64.85 24.78 77.73
qh_3_scaffold_329
Order: Halobacteriales (63.64%)
11 10468 bp 63.72 36.32 72.71
Displaying items 1-50 of 340 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.