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QH_9_Halobacteria_71_26

In projects: QH_9  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: QH_9_UNK

Properties

Avg. coverage: 26.19 Longest contig: 16.53 Kbp Bin length: 1.21 Mbp GC content: 70.95 %
Contigs count: 219 Features count: 1299 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 MC: 2 BSCG 18 / 51 ASCG 23 / 38 MC: 1
Displaying items 151-200 of 219 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_9_scaffold_1686
Order: Halobacteriales (50%)
6 7495 bp 71.61 27.42 89.22
qh_9_scaffold_2637
Class: Halobacteria (80%)
5 4061 bp 72.69 27.46 94.11
qh_9_scaffold_5129
Genus: Haloferax (50%)
4 7866 bp 71.78 27.49 68.19
qh_9_scaffold_5388
Class: Halobacteria (57.14%)
7 6496 bp 72.57 27.57 72.74
qh_9_scaffold_5650
Species: Candidatus Halobonum tyrrellensis (50%)
2 3192 bp 72.96 27.73 89.19
qh_9_scaffold_9095
Order: Halobacteriales (50%)
4 3677 bp 71.72 27.77 91.87
qh_9_scaffold_6329
Order: Natrialbales (75%)
4 3643 bp 70.68 27.78 92.31
qh_9_scaffold_5033
Class: Halobacteria (75%)
8 9139 bp 70.43 27.82 76.81
qh_9_scaffold_2548
Class: Halobacteria (87.5%)
16 8659 bp 69.68 27.90 93.79
qh_9_scaffold_2096
Species: Halococcus thailandensis (50%)
4 4595 bp 72.82 27.99 95.13
qh_9_scaffold_1520
Order: Halobacteriales (50%)
6 5495 bp 73.39 28.01 91.45
qh_9_scaffold_1883
Class: Halobacteria (85.71%)
7 4873 bp 70.90 28.03 84.83
qh_9_scaffold_2510
Class: Halobacteria (81.82%)
11 9783 bp 69.72 28.07 82.40
qh_9_scaffold_424
Class: Halobacteria (83.33%)
12 12494 bp 71.45 28.09 90.31
qh_9_scaffold_6117
Class: Halobacteria (66.67%)
3 3174 bp 72.02 28.13 87.43
qh_9_scaffold_4247
Class: Halobacteria (71.43%)
7 5513 bp 71.90 28.22 96.21
qh_9_scaffold_2591
Order: Natrialbales (60%)
5 5774 bp 70.94 28.26 72.06
qh_9_scaffold_4408
Order: Natrialbales (66.67%)
3 3077 bp 69.71 28.27 80.44
qh_9_scaffold_9482
Order: Halobacteriales (50%)
6 6264 bp 67.62 28.35 78.83
qh_9_scaffold_4939
Class: Halobacteria (60%)
5 5428 bp 69.55 28.45 76.82
qh_9_scaffold_2398
Genus: Halorubrum (50%)
4 4282 bp 64.18 28.49 96.54
qh_9_scaffold_1662
Order: Halobacteriales (66.67%)
6 5251 bp 72.88 28.54 91.87
qh_9_scaffold_10170
Class: Halobacteria (50%)
4 3592 bp 67.57 28.64 80.18
qh_9_scaffold_4800
Order: Halobacteriales (50%)
4 5977 bp 70.79 28.69 64.60
qh_9_scaffold_1419
Order: Halobacteriales (62.5%)
8 5701 bp 73.71 28.70 91.72
qh_9_scaffold_4710
Order: Halobacteriales (50%)
6 5663 bp 69.08 28.70 95.30
qh_9_scaffold_1550
Order: Halobacteriales (50%)
10 6553 bp 67.63 28.73 83.18
qh_9_scaffold_7444
Class: Halobacteria (77.78%)
9 7217 bp 70.06 28.74 84.09
qh_9_scaffold_4313
Class: Halobacteria (50%)
4 5211 bp 68.43 28.79 47.09
qh_9_scaffold_2291
Order: Halobacteriales (85.71%)
7 7762 bp 70.91 28.81 90.56
qh_9_scaffold_1514
Class: Halobacteria (87.5%)
16 14038 bp 71.22 28.88 80.99
qh_9_scaffold_5454
Order: Natrialbales (50%)
6 5919 bp 70.57 28.92 76.84
qh_9_scaffold_9444
Order: Halobacteriales (50%)
4 3098 bp 70.05 28.92 90.64
qh_9_scaffold_7885
Order: Halobacteriales (50%)
4 3938 bp 70.44 28.95 91.34
qh_9_scaffold_6456
Class: Halobacteria (55.56%)
9 8303 bp 73.09 29.01 86.28
qh_9_scaffold_3685
Class: Halobacteria (100%)
7 8536 bp 70.90 29.01 91.13
qh_9_scaffold_8319
Order: Halobacteriales (50%)
8 8652 bp 69.56 29.09 79.30
qh_9_scaffold_2068
Class: Halobacteria (80%)
10 4627 bp 67.41 29.09 84.22
qh_9_scaffold_8096
Class: Halobacteria (66.67%)
6 4331 bp 69.04 29.12 67.40
qh_9_scaffold_3328
Order: Natrialbales (66.67%)
6 5865 bp 69.94 29.17 87.47
qh_9_scaffold_2276
Class: Halobacteria (66.67%)
3 4412 bp 70.87 29.42 83.77
qh_9_scaffold_1897
Order: Natrialbales (50%)
10 10003 bp 71.12 29.49 86.58
qh_9_scaffold_3506
Genus: Haloferax (75%)
4 5320 bp 70.41 29.57 66.54
qh_9_scaffold_2537
Order: Natrialbales (66.67%)
3 4140 bp 70.41 29.57 86.16
qh_9_scaffold_10231
Order: Natrialbales (50%)
4 3681 bp 69.87 29.61 63.73
qh_9_scaffold_3112
Class: Halobacteria (100%)
3 3725 bp 71.62 29.66 82.31
qh_9_scaffold_5440
Order: Haloferacales (50%)
4 3263 bp 71.04 29.73 83.57
qh_9_scaffold_11312
Genus: Natronomonas (50%)
4 3928 bp 72.23 29.81 87.83
qh_9_scaffold_915
Order: Halobacteriales (54.55%)
11 12194 bp 71.80 30.11 93.59
qh_9_scaffold_4344
Species: Natronococcus occultus (50%)
2 3873 bp 72.09 30.11 82.03
Displaying items 151-200 of 219 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.