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QS_4_Halobacteriales_71_28

In projects: QS_4  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: QS_4_UNK

Properties

Avg. coverage: 28.22 Longest contig: 164.74 Kbp Bin length: 2.70 Mbp GC content: 70.65 %
Contigs count: 75 Features count: 2896 rRNAs count: 0 tRNAs count: 34

Genome completeness

near complete RP 34 / 55 MC: 3 BSCG 27 / 51 MC: 1 ASCG 34 / 38
Displaying items 1-50 of 75 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_4_scaffold_2231
Class: Halobacteria (60%)
5 6832 bp 71.24 26.99 83.21
qs_4_scaffold_3483
Order: Haloferacales (60%)
5 4589 bp 69.82 10.72 99.11
qs_4_scaffold_4156
Order: Halobacteriales (50%)
6 4008 bp 68.69 25.30 82.26
qs_4_scaffold_1583
Order: Natrialbales (71.43%)
7 9475 bp 68.42 24.57 85.46
qs_4_scaffold_1918
Class: Halobacteria (100%)
8 7894 bp 70.41 28.77 82.85
qs_4_scaffold_1975
Order: Halobacteriales (77.78%)
9 9090 bp 72.63 28.22 90.13
qs_4_scaffold_2391
Order: Halobacteriales (60%)
10 6401 bp 72.10 30.21 75.88
qs_4_scaffold_1678
Order: Halobacteriales (70%)
10 8929 bp 72.67 26.79 89.94
qs_4_scaffold_1116
Class: Halobacteria (90%)
10 12982 bp 71.25 31.40 95.26
qs_4_scaffold_2183
Class: Halobacteria (72.73%)
11 7778 bp 69.80 28.14 83.02
qs_4_scaffold_2068
Order: Halobacteriales (72.73%)
11 7304 bp 71.19 28.93 83.42
qs_4_scaffold_1059
Order: Halobacteriales (81.82%)
11 13536 bp 71.69 26.59 94.24
qs_4_scaffold_1281
Class: Halobacteria (84.62%)
13 11486 bp 71.69 28.99 88.18
qs_4_scaffold_1101
Order: Halobacteriales (53.85%)
13 13122 bp 70.12 26.32 85.73
qs_4_scaffold_1149
Species: Halogranum salarium (57.14%)
14 12727 bp 71.61 27.66 95.98
qs_4_scaffold_1476
Order: Halobacteriales (60%)
15 10125 bp 70.53 27.78 89.49
qs_4_scaffold_1610
Order: Halobacteriales (58.82%)
17 11289 bp 70.74 27.21 85.78
qs_4_scaffold_788
Class: Halobacteria (77.78%)
18 17372 bp 69.60 25.43 84.33
qs_4_scaffold_966
Order: Halobacteriales (50%)
18 17258 bp 69.70 28.57 87.06
qs_4_scaffold_1597
Order: Halobacteriales (52.63%)
19 18586 bp 72.17 26.50 82.32
qs_4_scaffold_836
Species: Halogeometricum pallidum (75%)
20 16255 bp 70.11 26.10 90.49
qs_4_scaffold_1664
Order: Halobacteriales (55%)
20 14328 bp 67.68 27.64 86.70
qs_4_scaffold_828
Class: Halobacteria (71.43%)
21 17392 bp 71.32 27.60 82.50
qs_4_scaffold_606
Order: Halobacteriales (71.43%)
21 21246 bp 70.92 30.60 92.39
qs_4_scaffold_465
Order: Halobacteriales (59.09%)
22 26044 bp 70.88 28.13 90.19
qs_4_scaffold_469
Order: Halobacteriales (54.55%)
22 25828 bp 69.99 27.17 89.30
qs_4_scaffold_597
Order: Halobacteriales (56.52%)
23 22354 bp 70.74 26.76 84.93
qs_4_scaffold_636
Order: Halobacteriales (70.83%)
24 20753 bp 72.08 29.22 89.77
qs_4_scaffold_873
Order: Halobacteriales (50%)
24 23921 bp 69.53 26.41 83.55
qs_4_scaffold_796
Order: Halobacteriales (65.38%)
26 26681 bp 69.91 25.79 84.00
qs_4_scaffold_693
Order: Halobacteriales (55.56%)
27 21296 bp 69.66 28.29 85.16
qs_4_scaffold_1231
Order: Halobacteriales (70.37%)
27 21804 bp 70.14 26.93 87.18
qs_4_scaffold_1186
Order: Natrialbales (51.72%)
29 23569 bp 71.50 28.92 93.85
qs_4_scaffold_669
Order: Halobacteriales (76.67%)
30 29278 bp 70.39 29.24 84.02
qs_4_scaffold_439
Class: Halobacteria (87.1%)
31 27129 bp 68.68 27.16 89.57
qs_4_scaffold_472
Class: Halobacteria (67.74%)
31 29091 bp 63.78 22.35 83.34
qs_4_scaffold_825
Class: Halobacteria (80.65%)
31 21082 bp 70.84 29.27 88.48
qs_4_scaffold_528
Order: Halobacteriales (54.84%)
31 27323 bp 70.44 28.89 75.69
qs_4_scaffold_754
Class: Halobacteria (85.29%)
34 36241 bp 69.12 28.29 78.84
qs_4_scaffold_311
Order: Halobacteriales (54.29%)
35 34485 bp 70.38 27.54 86.16
qs_4_scaffold_1038
Order: Halobacteriales (63.89%)
36 33624 bp 71.55 29.58 84.96
qs_4_scaffold_679
Order: Halobacteriales (78.38%)
37 40802 bp 68.94 29.17 91.97
qs_4_scaffold_529
Class: Halobacteria (86.84%)
38 37234 bp 69.62 28.15 86.34
qs_4_scaffold_383
Order: Halobacteriales (73.68%)
38 33590 bp 71.39 29.10 89.88
qs_4_scaffold_875
Class: Halobacteria (89.74%)
39 32354 bp 70.64 27.33 85.96
qs_4_scaffold_314
Order: Halobacteriales (58.97%)
39 33105 bp 70.92 27.88 88.83
qs_4_scaffold_400
Class: Halobacteria (71.79%)
39 28547 bp 69.17 29.09 89.97
qs_4_scaffold_585
Class: Halobacteria (90%)
40 33921 bp 70.50 29.22 86.73
qs_4_scaffold_302
Order: Halobacteriales (56.1%)
41 38929 bp 71.00 29.65 87.17
qs_4_scaffold_731
Order: Halobacteriales (56.1%)
41 41466 bp 72.46 28.08 91.25
Displaying items 1-50 of 75 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.