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QS_1_Halobacteriales_64_48

In projects: QS_1  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 47.68 Longest contig: 38.29 Kbp Bin length: 3.07 Mbp GC content: 64.33 %
Contigs count: 305 Features count: 3342 rRNAs count: 0 tRNAs count: 36

Genome completeness

near complete RP 32 / 55 MC: 5 BSCG 27 / 51 MC: 3 ASCG 34 / 38 MC: 1
Displaying items 251-300 of 305 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_3236
Order: Halobacteriales (57.14%)
7 6784 bp 64.78 44.55 77.30
qs_1_scaffold_7035
Order: Halobacteriales (50%)
4 3779 bp 66.98 44.54 90.90
qs_1_scaffold_1921
Order: Halobacteriales (57.14%)
14 10968 bp 65.53 44.50 84.60
qs_1_scaffold_18969
Class: Halobacteria (66.67%)
3 3098 bp 65.07 44.42 94.71
qs_1_scaffold_1440
Order: Halobacteriales (52.63%)
19 21037 bp 63.73 44.39 80.42
qs_1_scaffold_1021
Order: Halobacteriales (50%)
32 25776 bp 62.96 44.25 80.33
qs_1_scaffold_3743
Order: Halobacteriales (55%)
20 13446 bp 60.01 44.21 79.81
qs_1_scaffold_2534
Class: Halobacteria (91.67%)
12 9462 bp 59.55 44.16 75.43
qs_1_scaffold_3885
Class: Halobacteria (58.33%)
12 9721 bp 58.84 44.09 69.53
qs_1_scaffold_8920
Species: Halococcus hamelinensis (50%)
6 5474 bp 66.19 43.86 79.91
qs_1_scaffold_3171
Order: Halobacteriales (62.5%)
8 6664 bp 64.98 43.80 72.07
qs_1_scaffold_1358
Order: Halobacteriales (53.85%)
13 13356 bp 66.17 43.77 84.84
qs_1_scaffold_5524
Genus: Halococcus (66.67%)
3 3874 bp 64.92 43.73 87.82
qs_1_scaffold_5374
Order: Halobacteriales (54.55%)
11 8592 bp 63.89 43.73 86.24
qs_1_scaffold_8829
Class: Halobacteria (60%)
5 3206 bp 58.83 43.73 54.09
qs_1_scaffold_6664
Order: Halobacteriales (57.14%)
7 6026 bp 66.89 43.64 75.87
qs_1_scaffold_3672
Class: Halobacteria (50%)
4 5085 bp 65.66 43.48 76.11
qs_1_scaffold_5713
Class: Halobacteria (71.43%)
7 6555 bp 61.14 43.42 74.37
qs_1_scaffold_17150
Order: Halobacteriales (75%)
4 3315 bp 59.82 43.32 52.40
qs_1_scaffold_12712
Order: Halobacteriales (50%)
6 6598 bp 64.72 43.23 62.52
qs_1_scaffold_7263
Class: Halobacteria (50%)
4 3215 bp 65.47 43.19 89.39
qs_1_scaffold_14789
Order: Haloferacales (50%)
4 3262 bp 63.30 42.98 76.79
qs_1_scaffold_10810
Order: Halobacteriales (60%)
5 3193 bp 66.02 42.88 75.63
qs_1_scaffold_11659
Class: Halobacteria (75%)
4 3408 bp 66.05 42.84 90.58
qs_1_scaffold_3104
Order: Halobacteriales (70%)
10 9650 bp 65.94 42.82 85.37
qs_1_scaffold_352
Class: Halobacteria (85.71%)
28 24735 bp 61.11 42.78 79.75
qs_1_scaffold_4877
Order: Halobacteriales (57.14%)
14 10377 bp 63.18 42.39 72.51
qs_1_scaffold_1412
Class: Halobacteria (65.22%)
23 22396 bp 61.02 42.38 79.19
qs_1_scaffold_4842
Species: Haloferax elongans (50%)
4 4203 bp 55.91 42.37 84.96
qs_1_scaffold_6937
Order: Halobacteriales (62.5%)
8 7586 bp 61.76 42.21 81.16
qs_1_scaffold_7191
Order: Halobacteriales (50%)
8 5981 bp 61.38 42.17 86.47
qs_1_scaffold_3734
Class: Halobacteria (77.78%)
9 7623 bp 65.47 42.03 84.14
qs_1_scaffold_8374
Class: Halobacteria (94.12%)
17 9521 bp 61.07 41.84 63.37
qs_1_scaffold_13084
Class: Halobacteria (57.14%)
7 3787 bp 57.33 41.70 49.75
qs_1_scaffold_2882
Order: Halobacteriales (58.33%)
12 10408 bp 62.87 41.64 83.82
qs_1_scaffold_9686
Class: Halobacteria (62.5%)
8 5172 bp 60.67 41.57 69.90
qs_1_scaffold_14249
Genus: Halococcus (75%)
8 4682 bp 64.55 41.56 78.75
qs_1_scaffold_5003
Order: Halobacteriales (50%)
12 9902 bp 61.32 41.33 70.53
qs_1_scaffold_2376
Order: Halobacteriales (58.82%)
34 28292 bp 62.55 41.29 85.15
qs_1_scaffold_10125
Species: Halococcus hamelinensis (66.67%)
3 3011 bp 65.69 41.25 86.48
qs_1_scaffold_4398
Order: Halobacteriales (50%)
6 6054 bp 61.00 41.20 69.08
qs_1_scaffold_4634
Order: Halobacteriales (71.43%)
7 4321 bp 64.22 41.03 74.22
qs_1_scaffold_12038
Order: Halobacteriales (50%)
8 3844 bp 61.29 40.82 85.38
qs_1_scaffold_9578
Order: Halobacteriales (50%)
6 4317 bp 66.53 40.77 83.60
qs_1_scaffold_13839
Genus: Halococcus (50%)
4 3307 bp 67.19 40.32 85.46
qs_1_scaffold_1795
Order: Haloferacales (50%)
12 7966 bp 58.20 40.15 80.44
qs_1_scaffold_12028
Genus: Halococcus (50%)
6 6070 bp 66.19 39.98 79.77
qs_1_scaffold_3866
Class: Halobacteria (85.71%)
7 8319 bp 60.70 39.90 89.43
qs_1_scaffold_4087
Class: Halobacteria (100%)
5 5639 bp 63.15 39.50 72.94
qs_1_scaffold_16746
Class: Halobacteria (57.14%)
7 3034 bp 58.77 39.17 55.97
Displaying items 251-300 of 305 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.