ggKbase home page

QS_9_Halosimplex_carlsbadense_69_15

In projects: QS_9  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halosimplex carlsbadense  →  Halosimplex  →  Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Displaying items 51-100 of 249 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_9_scaffold_1163
Species: Halosimplex carlsbadense (76.92%)
13 11557 bp 69.52 14.16 82.91
qs_9_scaffold_1814
Order: Halobacteriales (66.67%)
9 11449 bp 66.41 14.65 84.22
qs_9_scaffold_3049
Order: Halobacteriales (54.55%)
11 11359 bp 68.51 14.00 93.12
qs_9_scaffold_1851
Order: Halobacteriales (50%)
10 11184 bp 68.10 15.05 82.78
qs_9_scaffold_2165
Species: Halosimplex carlsbadense (66.67%)
9 11014 bp 67.76 13.54 79.54
qs_9_scaffold_2477
Species: Halogeometricum pallidum (54.55%)
11 11007 bp 67.29 12.78 83.18
qs_9_scaffold_1369
Species: Halosimplex carlsbadense (61.54%)
13 11005 bp 68.89 16.57 85.11
qs_9_scaffold_1654
Order: Halobacteriales (77.78%)
9 10703 bp 68.90 15.87 89.13
qs_9_scaffold_930
Species: Halosimplex carlsbadense (62.5%)
8 10700 bp 69.95 13.23 91.93
qs_9_scaffold_2883
Species: Halosimplex carlsbadense (75%)
12 10631 bp 69.97 14.84 85.39
qs_9_scaffold_1564
Species: Halosimplex carlsbadense (83.33%)
12 10576 bp 69.28 12.59 88.64
qs_9_scaffold_1962
Order: Halobacteriales (54.55%)
11 10474 bp 68.88 13.98 87.45
qs_9_scaffold_1106
Genus: Halorubrum (60%)
10 10446 bp 68.12 14.47 88.91
qs_9_scaffold_3184
Species: Halosimplex carlsbadense (66.67%)
12 10435 bp 69.62 13.14 81.76
qs_9_scaffold_2905
Genus: Halosimplex (50%)
8 10277 bp 67.03 17.63 97.67
qs_9_scaffold_3366
Order: Halobacteriales (58.33%)
12 10067 bp 66.05 13.90 78.90
qs_9_scaffold_1037
Species: Halosimplex carlsbadense (78.95%)
19 10064 bp 69.17 17.52 98.46
qs_9_scaffold_3176
Species: Halosimplex carlsbadense (55.56%)
9 9822 bp 68.13 14.82 84.76
qs_9_scaffold_1390
Order: Halobacteriales (54.55%)
11 9819 bp 66.78 14.30 73.44
qs_9_scaffold_1092
Species: Halosimplex carlsbadense (55.56%)
9 9769 bp 68.90 14.71 90.38
qs_9_scaffold_3641
Species: Halosimplex carlsbadense (80%)
10 9741 bp 67.99 14.07 77.52
qs_9_scaffold_1441
Order: Halobacteriales (77.78%)
9 9699 bp 66.37 12.92 86.92
qs_9_scaffold_4314
Order: Halobacteriales (75%)
12 9641 bp 65.75 13.48 80.66
qs_9_scaffold_1665
Species: Halosimplex carlsbadense (75%)
8 9621 bp 69.96 13.69 88.84
qs_9_scaffold_2508
Species: Halosimplex carlsbadense (50%)
10 9580 bp 70.37 15.03 82.13
qs_9_scaffold_2749
Species: Halosimplex carlsbadense (50%)
10 9376 bp 69.84 14.98 87.03
qs_9_scaffold_1176
Species: Halosimplex carlsbadense (63.64%)
11 9346 bp 67.25 14.42 87.66
qs_9_scaffold_1191
Species: Halosimplex carlsbadense (77.78%)
9 9246 bp 66.35 15.51 86.31
qs_9_scaffold_3224
Species: Halosimplex carlsbadense (75%)
8 9133 bp 69.13 16.18 87.61
qs_9_scaffold_1813
Species: Haloarcula californiae (55.56%)
9 9071 bp 65.81 15.16 91.08
qs_9_scaffold_1224
Order: Halobacteriales (63.64%)
11 9068 bp 69.43 14.13 81.22
qs_9_scaffold_1683
Order: Halobacteriales (55.56%)
9 9066 bp 70.45 15.22 89.58
qs_9_scaffold_2623
Species: Halosimplex carlsbadense (50%)
10 8937 bp 67.62 15.74 77.88
qs_9_scaffold_1668
Order: Halobacteriales (54.55%)
11 8917 bp 65.91 14.00 75.33
qs_9_scaffold_1714
Species: Halosimplex carlsbadense (50%)
10 8828 bp 66.30 14.88 84.55
qs_9_scaffold_2621
Species: Halosimplex carlsbadense (60%)
10 8736 bp 68.17 14.34 85.41
qs_9_scaffold_1339
Species: Halosimplex carlsbadense (50%)
10 8568 bp 70.20 13.49 85.57
qs_9_scaffold_3467
Order: Halobacteriales (60%)
10 8557 bp 68.07 15.09 92.87
qs_9_scaffold_3660
Species: Halosimplex carlsbadense (83.33%)
6 8277 bp 68.08 15.32 86.52
qs_9_scaffold_3935
Species: Halosimplex carlsbadense (62.5%)
8 8260 bp 70.00 15.87 91.74
qs_9_scaffold_4471
Species: Halosimplex carlsbadense (72.73%)
11 8259 bp 70.09 15.51 78.86
qs_9_scaffold_1416
Species: Halosimplex carlsbadense (66.67%)
9 8251 bp 68.73 15.31 87.15
qs_9_scaffold_3357
Order: Halobacteriales (57.14%)
7 8189 bp 66.03 14.78 92.69
qs_9_scaffold_1472
Species: Halosimplex carlsbadense (87.5%)
8 8093 bp 69.75 15.98 87.04
qs_9_scaffold_3535
Class: Halobacteria (50%)
10 8072 bp 65.14 16.39 85.89
qs_9_scaffold_2108
Species: Halosimplex carlsbadense (87.5%)
8 7935 bp 70.45 12.31 67.71
qs_9_scaffold_1542
Species: Halosimplex carlsbadense (55.56%)
9 7871 bp 69.42 15.00 74.02
qs_9_scaffold_3606
Class: Halobacteria (77.78%)
9 7865 bp 69.24 15.23 87.54
qs_9_scaffold_3734
Order: Halobacteriales (71.43%)
7 7818 bp 70.13 15.11 89.03
qs_9_scaffold_6106
Order: Halobacteriales (85.71%)
7 7775 bp 69.05 16.53 80.41
Displaying items 51-100 of 249 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.