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SW_4_Halosimplex_carlsbadense_69_24

In projects: SW_4  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halosimplex carlsbadense  →  Halosimplex  →  Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Displaying items 1-50 of 175 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_3301
Species: Halosimplex carlsbadense (50%)
2 3324 bp 71.66 26.59 93.68
sw_4_scaffold_2765
Species: Halosimplex carlsbadense (100%)
2 3659 bp 70.51 24.60 88.63
sw_4_scaffold_7208
Species: Halosimplex carlsbadense (50%)
2 3426 bp 69.79 22.74 77.23
sw_4_scaffold_4749
Species: Halorhabdus utahensis (50%)
2 3069 bp 68.04 24.89 84.56
sw_4_scaffold_3651
Species: Haloarcula amylolytica (50%)
2 3948 bp 69.02 29.86 83.89
sw_4_scaffold_8250
Species: Halosimplex carlsbadense (66.67%)
3 3212 bp 72.23 21.67 93.59
sw_4_scaffold_2865
Class: Halobacteria (66.67%)
3 4748 bp 63.92 20.07 83.09
sw_4_scaffold_5764
Species: Halosimplex carlsbadense (100%)
3 3705 bp 68.83 26.40 82.83
sw_4_scaffold_6691
Order: Halobacteriales (100%)
3 3977 bp 72.77 28.24 82.15
sw_4_scaffold_3722
Species: Halosimplex carlsbadense (100%)
3 3092 bp 69.28 26.72 83.05
sw_4_scaffold_6935
Species: Halosimplex carlsbadense (66.67%)
3 3297 bp 71.31 20.53 79.34
sw_4_scaffold_4908
Species: Halosimplex carlsbadense (100%)
3 4494 bp 69.05 24.61 86.05
sw_4_scaffold_3806
Species: Halosimplex carlsbadense (66.67%)
3 3049 bp 66.81 20.79 88.26
sw_4_scaffold_8646
Species: Halosimplex carlsbadense (66.67%)
3 4232 bp 68.03 21.81 92.93
sw_4_scaffold_12230
Order: Halobacteriales (66.67%)
3 3109 bp 68.54 27.95 79.41
sw_4_scaffold_2365
Species: Halosimplex carlsbadense (66.67%)
3 3968 bp 66.86 27.97 92.46
sw_4_scaffold_7056
Order: Halobacteriales (66.67%)
3 3129 bp 66.67 25.54 95.49
sw_4_scaffold_17774
Class: Halobacteria (66.67%)
3 3104 bp 69.56 21.68 83.99
sw_4_scaffold_3630
Species: Halosimplex carlsbadense (100%)
3 3655 bp 69.77 19.05 95.87
sw_4_scaffold_9600
Species: Halosimplex carlsbadense (66.67%)
3 3495 bp 68.90 23.32 55.97
sw_4_scaffold_3121
Class: Halobacteria (66.67%)
3 3418 bp 72.64 24.46 91.81
sw_4_scaffold_1205
Genus: Haloarcula (66.67%)
3 5696 bp 69.87 22.81 93.70
sw_4_scaffold_8715
Species: Halosimplex carlsbadense (75%)
4 5049 bp 70.37 20.80 97.15
sw_4_scaffold_9177
Species: Halosimplex carlsbadense (75%)
4 3263 bp 69.66 23.08 84.03
sw_4_scaffold_5261
Species: Halosimplex carlsbadense (75%)
4 3352 bp 68.47 31.83 84.76
sw_4_scaffold_3892
Species: Halosimplex carlsbadense (75%)
4 3018 bp 67.66 25.78 95.92
sw_4_scaffold_8040
Species: Halosimplex carlsbadense (75%)
4 3437 bp 70.82 23.19 93.05
sw_4_scaffold_5969
Species: Halosimplex carlsbadense (75%)
4 3741 bp 70.33 21.84 93.42
sw_4_scaffold_4357
Species: Halosimplex carlsbadense (50%)
4 4479 bp 68.83 19.85 86.74
sw_4_scaffold_14150
Species: Halosimplex carlsbadense (75%)
4 3265 bp 66.80 24.47 73.69
sw_4_scaffold_3913
Species: Halosimplex carlsbadense (75%)
4 3707 bp 67.60 21.34 84.97
sw_4_scaffold_2628
Species: Halosimplex carlsbadense (75%)
4 4326 bp 70.18 21.31 83.15
sw_4_scaffold_7638
Species: Halosimplex carlsbadense (75%)
4 3631 bp 71.99 22.12 95.02
sw_4_scaffold_3955
Species: Halosimplex carlsbadense (100%)
4 3650 bp 68.88 29.12 91.40
sw_4_scaffold_3539
Order: Haloferacales (50%)
4 3199 bp 67.90 25.79 82.62
sw_4_scaffold_8812
Order: Halobacteriales (50%)
4 3070 bp 70.26 21.89 74.95
sw_4_scaffold_10312
Species: Halosimplex carlsbadense (75%)
4 3132 bp 67.88 19.35 86.49
sw_4_scaffold_2029
Species: Halosimplex carlsbadense (75%)
4 4287 bp 72.45 28.20 89.43
sw_4_scaffold_2224
Species: Halosimplex carlsbadense (50%)
4 4095 bp 65.03 24.03 85.64
sw_4_scaffold_1539
Species: Halosimplex carlsbadense (50%)
4 4990 bp 69.80 25.15 90.12
sw_4_scaffold_9745
Species: Halosimplex carlsbadense (50%)
4 3613 bp 67.92 31.50 85.03
sw_4_scaffold_7672
Species: Halosimplex carlsbadense (50%)
4 3647 bp 68.19 21.69 76.83
sw_4_scaffold_10784
Species: Halosimplex carlsbadense (50%)
4 3184 bp 64.26 19.94 72.08
sw_4_scaffold_2797
Species: Halosimplex carlsbadense (75%)
4 3639 bp 70.13 21.90 93.90
sw_4_scaffold_13799
Species: Halosimplex carlsbadense (50%)
4 3283 bp 70.51 20.96 84.16
sw_4_scaffold_2444
Species: Halorhabdus utahensis (50%)
4 3901 bp 67.14 26.40 95.59
sw_4_scaffold_4249
Species: Halosimplex carlsbadense (75%)
4 4092 bp 68.82 24.14 94.89
sw_4_scaffold_1751
Species: Natronomonas moolapensis (50%)
4 4672 bp 68.99 24.92 96.83
sw_4_scaffold_7487
Species: Halosimplex carlsbadense (75%)
4 3900 bp 69.41 19.69 66.23
sw_4_scaffold_4498
Species: Halosimplex carlsbadense (50%)
4 3189 bp 68.42 22.95 70.08
Displaying items 1-50 of 175 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.