ggKbase home page
Advanced Search
Search Help

SW_7_Halobacteria_71_33

In projects: SW_7  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: SW_7_UNK

Properties

Avg. coverage: 33.29 Longest contig: 41.25 Kbp Bin length: 1.75 Mbp GC content: 70.95 %
Contigs count: 142 Features count: 1861 rRNAs count: 0 tRNAs count: 27

Genome completeness

near complete RP 34 / 55 MC: 6 BSCG 25 / 51 MC: 3 ASCG 37 / 38 MC: 2
Displaying items 51-100 of 142 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_7_scaffold_2078
Order: Halobacteriales (50%)
16 19420 bp 70.44 34.32 78.83
sw_7_scaffold_2810
Order: Natrialbales (58.33%)
12 11479 bp 71.24 34.11 84.83
sw_7_scaffold_2049
Class: Halobacteria (69.57%)
23 17480 bp 71.90 34.09 87.80
sw_7_scaffold_1154
Class: Halobacteria (93.33%)
15 11526 bp 72.15 34.09 83.94
sw_7_scaffold_5769
Class: Halobacteria (55.56%)
9 7165 bp 69.76 34.07 76.02
sw_7_scaffold_234
Class: Halobacteria (84.62%)
26 24601 bp 71.53 34.04 87.12
sw_7_scaffold_2215
Order: Halobacteriales (50%)
12 10831 bp 69.30 33.96 92.65
sw_7_scaffold_4105
Order: Natrialbales (60%)
5 4696 bp 70.66 33.86 79.22
sw_7_scaffold_2811
Class: Halobacteria (71.43%)
7 4970 bp 70.22 33.84 70.56
sw_7_scaffold_765
Order: Halobacteriales (50%)
12 9306 bp 70.84 33.82 89.78
sw_7_scaffold_1833
Class: Halobacteria (76.47%)
17 18080 bp 72.75 33.79 85.87
sw_7_scaffold_210
Class: Halobacteria (90.48%)
42 36554 bp 72.05 33.71 89.28
sw_7_scaffold_1332
Class: Halobacteria (83.33%)
18 18538 bp 70.82 33.68 87.08
sw_7_scaffold_1187
Class: Halobacteria (83.33%)
24 20683 bp 72.67 33.59 90.37
sw_7_scaffold_2508
Order: Halobacteriales (71.43%)
7 4790 bp 71.17 33.49 77.85
sw_7_scaffold_4651
Class: Halobacteria (100%)
3 3973 bp 70.60 33.48 88.20
sw_7_scaffold_5818
Class: Halobacteria (66.67%)
6 5826 bp 71.97 33.45 88.98
sw_7_scaffold_329
Class: Halobacteria (100%)
16 15333 bp 72.09 33.41 92.57
sw_7_scaffold_3825
Order: Natrialbales (50%)
6 6533 bp 73.09 33.35 85.87
sw_7_scaffold_5696
Order: Natrialbales (50%)
6 4855 bp 70.75 33.35 93.49
sw_7_scaffold_2705
Order: Halobacteriales (50%)
8 5668 bp 70.78 33.26 87.12
sw_7_scaffold_5799
Class: Halobacteria (71.43%)
7 5288 bp 71.37 33.23 67.45
sw_7_scaffold_505
Class: Halobacteria (68.75%)
16 15363 bp 70.94 33.20 84.38
sw_7_scaffold_821
Class: Halobacteria (93.75%)
16 13845 bp 71.09 33.19 84.29
sw_7_scaffold_3070
Order: Halobacteriales (100%)
4 4243 bp 70.47 33.18 82.58
sw_7_scaffold_604
Class: Halobacteria (95%)
20 21782 bp 70.99 33.09 84.39
sw_7_scaffold_190
Order: Halobacteriales (50%)
34 36919 bp 70.78 33.09 90.99
sw_7_scaffold_3391
Class: Halobacteria (80%)
10 7354 bp 71.28 33.08 87.99
sw_7_scaffold_2438
Order: Natrialbales (54.55%)
11 9656 bp 71.44 33.07 85.23
sw_7_scaffold_593
Class: Halobacteria (81.82%)
11 11683 bp 71.33 32.98 77.55
sw_7_scaffold_474
Class: Halobacteria (77.78%)
36 29682 bp 70.45 32.97 89.32
sw_7_scaffold_1355
Order: Halobacteriales (75%)
8 7376 bp 71.03 32.93 85.05
sw_7_scaffold_1363
Class: Halobacteria (83.33%)
12 13971 bp 71.31 32.93 90.53
sw_7_scaffold_1831
Class: Halobacteria (81.25%)
16 9592 bp 72.57 32.91 88.04
sw_7_scaffold_319
Class: Halobacteria (61.11%)
36 37392 bp 71.31 32.88 82.10
sw_7_scaffold_488
Class: Halobacteria (85.71%)
42 41252 bp 71.55 32.85 85.90
sw_7_scaffold_1125
Order: Halobacteriales (63.64%)
11 10771 bp 72.50 32.75 85.03
sw_7_scaffold_1445
Class: Halobacteria (75.86%)
29 25575 bp 71.21 32.71 83.44
sw_7_scaffold_2805
Class: Halobacteria (86.67%)
15 8610 bp 69.18 32.71 86.42
sw_7_scaffold_735
Class: Halobacteria (68.42%)
19 17794 bp 71.01 32.65 83.52
sw_7_scaffold_1334
Order: Halobacteriales (77.78%)
9 8147 bp 70.65 32.63 84.99
sw_7_scaffold_5901
Order: Natrialbales (62.5%)
8 7106 bp 71.69 32.59 80.85
sw_7_scaffold_6459
Class: Halobacteria (71.43%)
7 3385 bp 73.32 32.56 82.95
sw_7_scaffold_6030
Class: Halobacteria (80%)
5 4834 bp 70.48 32.48 81.67
sw_7_scaffold_3128
Order: Halobacteriales (58.33%)
12 9945 bp 72.23 32.46 87.93
sw_7_scaffold_5139
Class: Halobacteria (66.67%)
3 3034 bp 71.46 32.37 96.61
sw_7_scaffold_1718
Order: Halobacteriales (54.55%)
22 21835 bp 70.00 32.17 89.43
sw_7_scaffold_1720
Class: Halobacteria (87.5%)
8 5974 bp 71.54 32.16 85.77
sw_7_scaffold_2641
Order: Halobacteriales (60%)
10 10116 bp 70.43 31.97 89.29
sw_7_scaffold_2815
Class: Halobacteria (77.78%)
9 9790 bp 69.06 31.92 81.76
Displaying items 51-100 of 142 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.