ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

sw_7_scaffold_6506_3

Organism: SW_7_Halobacteriales_67_15

partial RP 19 / 55 MC: 1 BSCG 18 / 51 MC: 1 ASCG 13 / 38
Location: comp(3274..4140)

Top 3 Functional Annotations

Value Algorithm Source
Probable tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01081}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01081};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01081}; tRNA pseud similarity UNIPROT
DB: UniProtKB
  • Identity: 65.1
  • Coverage: 295.0
  • Bit_score: 397
  • Evalue 1.90e-107
Probable tRNA pseudouridine synthase B n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0IW01_HALVA similarity UNIREF
DB: UNIREF100
  • Identity: 65.1
  • Coverage: 295.0
  • Bit_score: 397
  • Evalue 1.30e-107
H/ACA RNA-protein complex component Cbf5p similarity KEGG
DB: KEGG
  • Identity: 67.6
  • Coverage: 293.0
  • Bit_score: 394
  • Evalue 3.20e-107

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Haloarcula vallismortis → Haloarcula → Halobacteriales → Halobacteria → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 867
ATGCGGTCGAGTCCCGACCGACGCACGCCCGAGGAGCTGCTCTCCTTCGGCGTCGTCAATCTGGACAAGCCCCCGGGACCGTCGGCCCATCAGGTCGCCGGCTGGCTGCGCGATCACGCCGAGCAGGACCGGGCCGCGCACTCAGGAACCCTCGATCCGAAGGTGACGGGCTGTCTGCCGACGCTGCTCGGGACGGGCGTCCGACTCGCACAGCTGTTCGACGACGCCGTCAAGGAGTACGTCGCCGTCCTCGAACTCCACGGTCGCACGCCCGCGGATCTCGAATCGATGATCGCGGAGTTCGAGGGCGAGATCTACCAGAAGCCGCCGCGCAAAAGCGCCGTCTCGCGCCGACTTCGCGTCCGTGAGATTCACGAACTCGACGTTGTGGAGACGGACGAACGACGCGCACTCCTCCGAATTCGGTGTGCGTCCGGGACGTATATCCGGAAGCTCTGTCACGATATCGGGCTCGCGGTCGGGACGGGTGCGCACATGGGCGATCTCCGACGGACGGCGACGGCGACGTTCGACGACACGACGCTGGCGACGATCCACGAGTTCCACGACGCCGTCACCGAGTGGCGCGAACACGGCGACGAGACGTGGCTTCGCGAGGTGGTGCAGCCGGCAGAGCGTGTGTTACGCGGCGTTCCACGCGTCACGGTCGCGGAGAGTGCAGTCCCCGAGATCGCCGAGGGCGCACCGGTGTACGCACCCGGCGTCCTCGCGAGCGAGACGGACGAGGAAGGGACGCTCGTCGCCTGCGACGCCCCGAACGGTTCGGCCGTCTGTATCGGCACGCTGGTCGGTGATCCGGCGGCGACGAGCGGGACGGTCGTCGAATTAGAACGCGTCCTGCTCTGA
PROTEIN sequence
Length: 289
MRSSPDRRTPEELLSFGVVNLDKPPGPSAHQVAGWLRDHAEQDRAAHSGTLDPKVTGCLPTLLGTGVRLAQLFDDAVKEYVAVLELHGRTPADLESMIAEFEGEIYQKPPRKSAVSRRLRVREIHELDVVETDERRALLRIRCASGTYIRKLCHDIGLAVGTGAHMGDLRRTATATFDDTTLATIHEFHDAVTEWREHGDETWLREVVQPAERVLRGVPRVTVAESAVPEIAEGAPVYAPGVLASETDEEGTLVACDAPNGSAVCIGTLVGDPAATSGTVVELERVLL*