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PLM3_30_b1_sep16_scaffold_3

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Displaying items 151-174 of 174 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_3_147
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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118676..119068
DNA (393bp) protein (131aa)
50S ribosomal protein L7ae Tax=Candidatus Nitrososphaera gargensis RepID=K0IEI0_NITGG
rpl7ae; 50S ribosomal protein L7ae
50S ribosomal protein L7Ae {ECO:0000256|HAMAP-Rule:MF_00326}; Ribosomal protein L8e {ECO:0000256|HAMAP-Rule:MF_00326}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_3_148
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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119065..119292
DNA (228bp) protein (76aa)
30S ribosomal protein S28e Tax=Candidatus Nitrososphaera gargensis RepID=K0IIL4_NITGG
rps28e; 30S ribosomal protein S28e
30S ribosomal protein S28e {ECO:0000256|HAMAP-Rule:MF_00292}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_3_149
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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119520..119927
DNA (408bp) protein (136aa)
Nucleoside diphosphate kinase {ECO:0000256|RuleBase:RU004013}; EC=2.7.4.6 {ECO:0000256|RuleBase:RU004013};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Nucleoside diphosphate kinase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKG5_NITGG
nucleoside diphosphate kinase
PLM3_30_b1_sep16_scaffold_3_150
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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119928..121712
DNA (1785bp) protein (595aa)
Putative translation initiation factor IF-2 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILW8_NITGG
translation initiation factor eaIF-5B
Probable translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_3_151
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(121776..122114)
DNA (339bp) protein (113aa)
Putative thioredoxin Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEH7_NITGG
trxA3; thioredoxin
Putative thioredoxin {ECO:0000313|EMBL:AFU59746.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_3_152
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(122386..122874)
DNA (489bp) protein (163aa)
Putative archease protein family (DUF101/UPF0211) Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INA3_NITGG
hypothetical protein
Protein archease {ECO:0000256|HAMAP-Rule:MF_01222}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_3_153
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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122888..124153
DNA (1266bp) protein (422aa)
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Histidine--tRNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGR5_NITGG
PLM3_30_b1_sep16_scaffold_3_154
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(124179..124436)
DNA (258bp) protein (86aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICB9_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59026.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_3_155
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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124594..126315
DNA (1722bp) protein (574aa)
sdhA; succinate dehydrogenase flavoprotein subunit/fumarate reductase (EC:1.3.99.1)
Succinate dehydrogenase flavoprotein subunit/fumarate reductase {ECO:0000313|EMBL:AFU59028.1}; EC=1.3.99.1 {ECO:0000313|EMBL:AFU59028.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Succinate dehydrogenase flavoprotein subunit/fumarate reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIW2_NITGG
PLM3_30_b1_sep16_scaffold_3_156
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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126315..126761
DNA (447bp) protein (149aa)
sdhC; succinate dehydrogenase/fumarate reductase (EC:1.3.99.1)
Putative succinate dehydrogenase/fumarate reductase {ECO:0000313|EMBL:AFU59029.1}; EC=1.3.99.1 {ECO:0000313|EMBL:AFU59029.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative succinate dehydrogenase/fumarate reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INA4_NITGG
PLM3_30_b1_sep16_scaffold_3_157
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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126764..127120
DNA (357bp) protein (119aa)
sdhD; succinate dehydrogenase/fumarate reductase (EC:1.3.99.1)
Putative succinate dehydrogenase/fumarate reductase {ECO:0000313|EMBL:AFU59030.1}; EC=1.3.99.1 {ECO:0000313|EMBL:AFU59030.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative succinate dehydrogenase/fumarate reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGR7_NITGG
PLM3_30_b1_sep16_scaffold_3_158
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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127130..127924
DNA (795bp) protein (265aa)
sdhB; FeS-center protein of succinate dehydrogenase/fumarate reductase (EC:1.3.99.1)
FeS-center protein of succinate dehydrogenase/fumarate reductase {ECO:0000313|EMBL:AFU59031.1}; EC=1.3.99.1 {ECO:0000313|EMBL:AFU59031.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
FeS-center protein of succinate dehydrogenase/fumarate reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICC3_NITGG
PLM3_30_b1_sep16_scaffold_3_159
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(127968..128285)
DNA (318bp) protein (106aa)
DUF59 domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKL9_NITGG
hypothetical protein
DUF59 domain-containing protein {ECO:0000313|EMBL:AFU59032.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_3_160
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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128417..129904
DNA (1488bp) protein (496aa)
argH; argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Argininosuccinate lyase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF38_NITGG
PLM3_30_b1_sep16_scaffold_3_161
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(130145..131080)
DNA (936bp) protein (312aa)
argF; ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase, catabolic {ECO:0000256|HAMAP-Rule:MF_01109}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Ornithine carbamoyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INH0_NITGG
PLM3_30_b1_sep16_scaffold_3_162
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(131064..132485)
DNA (1422bp) protein (474aa)
Signal recognition particle receptor FtsY Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHF3_NITGG
ftsY; signal recognition particle receptor FtsY
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_3_163
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(132448..132906)
DNA (459bp) protein (153aa)
Prefoldin subunit alpha Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ID92_NITGG
prefoldin subunit alpha
Prefoldin subunit alpha {ECO:0000256|HAMAP-Rule:MF_00308}; GimC subunit alpha {ECO:0000256|HAMAP-Rule:MF_00308}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_3_164
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(133014..133481)
DNA (468bp) protein (156aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILH7_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60428.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_3_165
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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133749..134696
DNA (948bp) protein (316aa)
Putative phosphohydrolase, DHH superfamily Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICK4_NITGG
putative DHD superfamily phosphohydrolase
Putative DHD superfamily phosphohydrolase {ECO:0000313|EMBL:AIF84912.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_3_166
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(135414..136625)
DNA (1212bp) protein (404aa)
Putative GTP binding protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN04_NITGG
GTP binding protein
Putative GTP binding protein {ECO:0000313|EMBL:AFU58529.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_3_167
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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136854..137792
DNA (939bp) protein (313aa)
putative UDP-N-acetyl-D-mannosaminuronate dehydrogenase (EC:1.1.1.22)
Putative UDP-N-acetyl-D-mannosaminuronate dehydrogenase {ECO:0000313|EMBL:AIC16647.1}; EC=1.1.1.22 {ECO:0000313|EMBL:AIC16647.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
TrkA-N domain-containing protein Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B5Z3_9ARCH
PLM3_30_b1_sep16_scaffold_3_168
R_RIF_OD1_12_45_13b, RIF-OD1-12, Parcubacteria, Bacteria

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137861..138493
DNA (633bp) protein (211aa)
LmbE family protein Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GFA8_METPE
LmbE family protein
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_12_45_13b_curated
PLM3_30_b1_sep16_scaffold_3_trna_3
unknown

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138761..138849
DNA (89bp)
transferRNA Arg
PLM3_30_b1_sep16_scaffold_3_169
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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138902..140089
DNA (1188bp) protein (396aa)
Putative uncharacterized protein Tax=uncultured marine crenarchaeote HF4000_ANIW97P9 RepID=B3T3H0_9ARCH
Site-specific recombinase, phage integrase family
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:AJW71742.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. NF5.;"
Displaying items 151-174 of 174 in total

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