ggKbase home page

PLM3_30_b1_sep16_scaffold_3_143

Organism: PLM3_30_b1_sep16_Thaumarchaeota_Marine_Group_I_34_13

near complete RP 33 / 55 MC: 2 BSCG 18 / 51 MC: 2 ASCG 38 / 38 MC: 1
Location: comp(114518..114736)

Top 3 Functional Annotations

Value Algorithm Source
Putative small nuclear ribonucleoprotein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH49_NITGG similarity UNIREF
DB: UNIREF100
  • Identity: 85.9
  • Coverage: 71.0
  • Bit_score: 128
  • Evalue 2.20e-27
Small nuclear ribonucleoprotein, LSM family similarity KEGG
DB: KEGG
  • Identity: 85.9
  • Coverage: 71.0
  • Bit_score: 128
  • Evalue 6.30e-28
Putative small nuclear ribonucleoprotein {ECO:0000313|EMBL:AFU59195.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.9
  • Coverage: 71.0
  • Bit_score: 128
  • Evalue 3.10e-27

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Candidatus Nitrososphaera gargensis → Nitrososphaera → Nitrososphaerales → Nitrososphaeria → Thaumarchaeota → Archaea

Sequences

DNA sequence
Length: 219
ATGGCTGTAAAGGTACTTGACGAGAGTTTAGGTAAAATAGTTCTTATAAAACTGAAAGGGAGTAAAGTTATTCGTGGAAATTTACATGGTTTTGATCAACATATGAATTTGCTACTAGACAATTCCGTTGAATTATTTGACGAAGGAAAATCTAATGAAATTGGAACTATTGTTGTAAGGGGAGATAACGTTGTTATGATATCTCCACCGCCAGCTTGA
PROTEIN sequence
Length: 73
MAVKVLDESLGKIVLIKLKGSKVIRGNLHGFDQHMNLLLDNSVELFDEGKSNEIGTIVVRGDNVVMISPPPA*