ggKbase home page

rifoxyc1_full_scaffold_7586_8

Organism: RIFOXYC1_FULL_Pacearchaeota_33_130

partial RP 34 / 55 MC: 2 BSCG 20 / 51 MC: 1 ASCG 28 / 38 MC: 2
Location: 4766..5407

Top 3 Functional Annotations

Value Algorithm Source
LSU ribosomal protein L11P n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GXB4_METFV id=5103030 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome similarity UNIREF
DB: UNIREF100
  • Identity: 44.2
  • Coverage: 215.0
  • Bit_score: 176
  • Evalue 2.80e-41
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=RBG_13_Pacearchaeota_33_26_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 64.5
  • Coverage: 211.0
  • Bit_score: 275
  • Evalue 8.00e-71
LSU ribosomal protein L11P similarity KEGG
DB: KEGG
  • Identity: 44.2
  • Coverage: 215.0
  • Bit_score: 176
  • Evalue 7.80e-42

Lists

This feature is not on any list.

Notes

Archaea - probably DPANN (major TSP) Jill Banfield (12/4/14)

Taxonomy

RBG_13_Pacearchaeota_33_26_curated → Pacearchaeota → DPANN → Archaea

Sequences

DNA sequence
Length: 642
ATGATAATTAAAATTTTAGCAGACGGTGGAAACATGGCGCCAGGGCCAGCATTAAGTCAAAAGTTGGGACCAGCAGGAATTCCAATACCGCAAGTTATTCAAAGAGTTAACGAAGCAACAAAAAATTTCAAGGGAATGAAAGTTCCAATAGAATTAGATGTAAACCCGTCGACAAAAACATTCGAAGTAAGAGTTTTCTCCCCACCAGTTTCGGAATTAGTAAAAAGCGAATTAAAAATTACCAAAGGTTCTGGAAGGCAAGGAACTTTTTATGTAGGCAACGCATCAATTGAACAAGTAATATCAGTAGCAAGAATAAAATTACCAAATTTACTTTGCAACAATTTGAAAACAGCAGTAAAGAACGTCGCTGGAACTTGTCAAAGTTTAGGAGTTTTAGTTGAAAATAAACCTGCGAAAGAAATTGAAGAAGAAATAGATTCAGGAAAATACGATAAACAAATAAACGAAGAGATTACAGAAACTCCAGAAGAAAAGAAAAAAGAATTAGAAGAATATTTCACAAAGATTAAAACTCAACAGGACAACCTTCTTAAACAAGAACAAGTAGCTAAAAAAGTTGCGGACGAGAAGGCAAGTAAAAAAGCTGAAAAGGTTTCAGCACCTGCTCCAAAGAAATAG
PROTEIN sequence
Length: 214
MIIKILADGGNMAPGPALSQKLGPAGIPIPQVIQRVNEATKNFKGMKVPIELDVNPSTKTFEVRVFSPPVSELVKSELKITKGSGRQGTFYVGNASIEQVISVARIKLPNLLCNNLKTAVKNVAGTCQSLGVLVENKPAKEIEEEIDSGKYDKQINEEITETPEEKKKELEEYFTKIKTQQDNLLKQEQVAKKVADEKASKKAEKVSAPAPKK*