ggKbase home page

RifSed_csp2_16ft_2_scaffold_54863_1

Organism: RifSed_csp2_16ft_2_Abawaca2_27

near complete RP 43 / 55 MC: 2 BSCG 45 / 51 MC: 3 ASCG 9 / 38
Location: 2..340

Top 3 Functional Annotations

Value Algorithm Source
transmembrane_regions 7..29 id=75638 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11 similarity UNIREF
DB: UNIREF100
  • Identity: 38.5
  • Coverage: 109.0
  • Bit_score: 76
  • Evalue 1.20e-11
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_50_28_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 71.4
  • Coverage: 112.0
  • Bit_score: 161
  • Evalue 6.80e-37

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_RIF_OP11_03_50_28 → RIF-OP11-3 → Microgenomates → Bacteria

Sequences

DNA sequence
Length: 339
ACCAATCCCCTGCGTCCGATCGCCCTCCTGCCTGATGCGTCGCTTGATCTCCTCTTTGCTTCCGCCAGCCACGCCGCCAACTCGCTGCTCCTAGCAGTCACCGATGCATCCGGATCCGCCATCGCCAGCGCCAGCGCGCAATTAACCGGACCGGGAAGTTATGACGAAACCATCTTCACCGGCGAGTCGGATGTTCCCGATTTCGGCCAAGCCTTGTTTTCGCAGCTGCAGTCAGGTTCCTTTACCGTTCAAGCCTCAAAAATCGGATTTCAGCCGGCAAATGAAGTCGTTGATGTATCCGGACAAACCGAATATCTCATTCAACTGGATTCACTTTAA
PROTEIN sequence
Length: 113
TNPLRPIALLPDASLDLLFASASHAANSLLLAVTDASGSAIASASAQLTGPGSYDETIFTGESDVPDFGQALFSQLQSGSFTVQASKIGFQPANEVVDVSGQTEYLIQLDSL*