ggKbase home page

bjp_ig2599_scaffold_10485_2

Organism: BJP_ig2599_Miz_0z1_300_2014_Parcubacteria_38_329

near complete RP 36 / 55 MC: 1 BSCG 42 / 51 ASCG 8 / 38
Location: 461..1042

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigW Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 49.7
  • Coverage: 187.0
  • Bit_score: 186
  • Evalue 4.40e-44
RNA polymerase, sigma-24 subunit, ECF subfamily protein id=3736405 bin=GWC2_OD1_43_27 species=Flavobacterium sp. CF136 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete) similarity UNIREF
DB: UNIREF100
  • Identity: 42.0
  • Coverage: 188.0
  • Bit_score: 154
  • Evalue 1.30e-34
RNA polymerase sigma factor RpoE similarity KEGG
DB: KEGG
  • Identity: 29.9
  • Coverage: 174.0
  • Bit_score: 97
  • Evalue 4.20e-18

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_RIF_OD1_13_50_25 → RIF-OD1-13 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 582
ATGACAAGCGAGGATTTGAAAAAATTTAGAGACGAGGAAATTCTGGCGATATCCCGTAAAAAACCGTCTCTTTTTGGCTTGCTTGTTGATAAATACCAAGACGCCTTTTTAAGGGCAGCTTTTAAGATTATCAACCACAAAGAAGAATCGCAGGATATTGTTCAGGAAGCTTTTACCAAGATTTATTTGAATGCCCATAAGTTCAAAGAACAGAAGGGAGGGAGTTTTAAAAGCTGGGCTTATAAAATTGTCATTAATACAGCCCTGACGCATTATAGAAAGGTAAAATTAATCCAGAGATCTGTTGAATACTATGATTCCAATTTATATGATGCGGCGGAAAATAACGATGCGGAGTTAAACACTGATATGAAGATTCTTGTGTCCAAGACCTTGCGCGGCATGCCGCAGCATTTGCAGAGTGTTTTGAGAAAATATTATTTGGAAGACAAATCGCAGAAAGACATTGCGCTTGAAGAAAACATTTCTGTCACTGCCGTGAAAATGAGATTATTCAGAGCCAAAAAAATTTTTAAAAAAATTATTGAAGAAGATAAAAAATTATGCATCACGTCAATTTAA
PROTEIN sequence
Length: 194
MTSEDLKKFRDEEILAISRKKPSLFGLLVDKYQDAFLRAAFKIINHKEESQDIVQEAFTKIYLNAHKFKEQKGGSFKSWAYKIVINTALTHYRKVKLIQRSVEYYDSNLYDAAENNDAELNTDMKILVSKTLRGMPQHLQSVLRKYYLEDKSQKDIALEENISVTAVKMRLFRAKKIFKKIIEEDKKLCITSI*