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gwf1_scaffold_566

Alias: WS6_GWF1_33_233_3

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Displaying items 31-60 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf1_scaffold_566_31

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30101..30829
DNA (729bp) protein (243aa)
RNA methyltransferase, TrmH family n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C556_9FIRM
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:KKP55337.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
tRNA/rRNA methyltransferase SpoU
(db=HMMPfam db_id=PF00588 from=99 to=234 evalue=2.7e-29 interpro_id=IPR001537 interpro_description=tRNA/rRNA methyltransferase, SpoU GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
gwf1_scaffold_566_32

Not on your lists

31546..32379
DNA (834bp) protein (278aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55338.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
gwf1_scaffold_566_33

Not on your lists

32806..33162
DNA (357bp) protein (119aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55339.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
gwf1_scaffold_566_34
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(33159..33764)
DNA (606bp) protein (202aa)
Signal peptidase, cleaves prepilin-like protein, leader peptidase (Prepilin peptidase) / N-methyltransferase {ECO:0000313|EMBL:KKP45879.1}; EC=3.4.23.43 {ECO:0000313|EMBL:KKP45879.1};; TaxID=1619096 s
Signal peptidase, cleaves prepilin-like proteins n=1 Tax=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) RepID=A0AIZ9_LISW6
signal peptidase, cleaves prepilin-like proteins
transmembrane_regions (db=TMHMM db_id=tmhmm from=16 to=38)
gwf1_scaffold_566_35

Not on your lists

comp(33745..34119)
DNA (375bp) protein (125aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55341.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
seg (db=Seg db_id=seg from=5 to=25)
gwf1_scaffold_566_36

Not on your lists

comp(34116..34589)
DNA (474bp) protein (158aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55342.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
Pili subunits (db=superfamily db_id=SSF54523 from=9 to=147 evalue=2.3e-06)
gwf1_scaffold_566_37

Not on your lists

comp(34579..36486)
DNA (1908bp) protein (636aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55343.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=518 to=529)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=8 to=31 evalue=0.013 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
gwf1_scaffold_566_38

Not on your lists

comp(36473..36937)
DNA (465bp) protein (155aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55344.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=10 to=33 evalue=0.0065 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
Pili subunits (db=superfamily db_id=SSF54523 from=13 to=123 evalue=8.6e-12)
gwf1_scaffold_566_39
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(36930..38036)
DNA (1107bp) protein (369aa)
Type II secretion system protein n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SPM7_PLAL2
type II secretion system protein; K02653 type IV pilus assembly protein PilC Tax=RIFOXYB1_FULL_WS6_33_15_curated
type II secretion system protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=133 to=155)
gwf1_scaffold_566_40

Not on your lists

comp(38033..39484)
DNA (1452bp) protein (484aa)
Type II secretion system protein E n=12 Tax=Thermoanaerobacter RepID=B0K0R6_THEPX
Type II secretion system protein E {ECO:0000313|EMBL:KKP55346.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
type IV fimbrial assembly protein PilB
seg (db=Seg db_id=seg from=107 to=154)
gwf1_scaffold_566_41

Not on your lists

comp(39541..39972)
DNA (432bp) protein (144aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55347.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=11 to=32)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=6 to=29 evalue=0.0094 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
gwf1_scaffold_566_42
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(40042..40548)
DNA (507bp) protein (169aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45887.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
gwf1_scaffold_566_43
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(40532..40792)
DNA (261bp) protein (87aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45888.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=64)
seg (db=Seg db_id=seg from=9 to=23)
gwf1_scaffold_566_44

Not on your lists

comp(40857..41123)
DNA (267bp) protein (89aa)
Kielin/chordin-like protein {ECO:0000313|EMBL:KKP55349.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
(db=HMMPfam db_id=PF05375 from=58 to=80 evalue=6.5e-07 interpro_id=IPR008037 interpro_description=Proteinase inhibitor I19, pacifastin GO=Molecular Function: peptidase inhibitor activity (GO:0030414))
gwf1_scaffold_566_45
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(41133..41408)
DNA (276bp) protein (92aa)
hypothetical protein LmonL_01734 n=1 Tax=Listeria monocytogenes LO28 RepID=UPI0001B41E88
Uncharacterized protein {ECO:0000313|EMBL:KKP45890.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
gwf1_scaffold_566_46
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

41654..42523
DNA (870bp) protein (290aa)
Endonuclease IV (EC:3.1.21.2 3.1.21.-) Tax=RIFOXYB1_FULL_WS6_33_15_curated
Endonuclease IV (EC:3.1.21.2 3.1.21.-)
Probable endonuclease 4 n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0Y8_9FIRM
AP_NUCLEASE_F2_3 (db=PatternScan db_id=PS00731 from=221 to=237 evalue=0.0 interpro_id=IPR018246 interpro_description=AP endonuclease, family 2, zinc binding site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: endonuclease activity (GO:0004519), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281), Molecular Function: zinc ion binding (GO:0008270))
gwf1_scaffold_566_47
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

42523..45312
DNA (2790bp) protein (930aa)
ATP-dependent DNA helicase, DNA helicase II / ATP-dependent DNA helicase PcrA {ECO:0000313|EMBL:KKP45892.1}; EC=3.6.4.12 {ECO:0000313|EMBL:KKP45892.1};; TaxID=1619096 species="Bacteria; candidate divi
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLR2_9BACT rbh
hypothetical protein
seg (db=Seg db_id=seg from=16 to=27)
gwf1_scaffold_566_48
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

45456..45782
DNA (327bp) protein (109aa)
seg Tax=RIFOXYB1_FULL_WS6_33_15_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
seg (db=Seg db_id=seg from=44 to=58)
gwf1_scaffold_566_49
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

45772..46107
DNA (336bp) protein (112aa)
seg Tax=RIFOXYB1_FULL_WS6_33_15_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=70)
seg (db=Seg db_id=seg from=100 to=107)
gwf1_scaffold_566_50

Not on your lists

46161..46523
DNA (363bp) protein (121aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55355.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=37 to=46)
gwf1_scaffold_566_51

Not on your lists

46569..46841
DNA (273bp) protein (91aa)
hypothetical protein cdivTM_30108 n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI00016B2684
Uncharacterized protein {ECO:0000313|EMBL:KKP55356.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
gwf1_scaffold_566_52
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

46843..47214
DNA (372bp) protein (124aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45897.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=60 to=82)
gwf1_scaffold_566_53
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

47250..48047
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Mycoplasma sp. G5847 RepID=L5L9L2_9MOLU
Uncharacterized protein {ECO:0000313|EMBL:KKP45898.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
peptidase, M23/M37 family
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwf1_scaffold_566_54
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

48044..48478
DNA (435bp) protein (145aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45899.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
(db=HMMPfam db_id=PF08486 from=71 to=134 evalue=4.8e-14 interpro_id=IPR013693 interpro_description=Sporulation stage II protein D, amidase enhancer LytB N-terminal)
gwf1_scaffold_566_55

Not on your lists

48508..48837
DNA (330bp) protein (110aa)
Tat (Twin-arginine translocation) pathway signal sequence domain protein {ECO:0000313|EMBL:KKP55358.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacter
seg (db=Seg db_id=seg from=48 to=59)
gwf1_scaffold_566_56
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

48882..49511
DNA (630bp) protein (210aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45901.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=62 to=84)
gwf1_scaffold_566_57

Not on your lists

49513..49770
DNA (258bp) protein (86aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55360.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=22 to=41)
seg (db=Seg db_id=seg from=72 to=84)
gwf1_scaffold_566_58
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

49775..52072
DNA (2298bp) protein (766aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45903.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=360 to=377)
seg (db=Seg db_id=seg from=213 to=231)
coiled-coil (db=Coil db_id=coil from=76 to=97 evalue=NA)
gwf1_scaffold_566_59

Not on your lists

52087..52530
DNA (444bp) protein (148aa)
SsrA-binding protein n=1 Tax=Sulfurihydrogenibium sp. (strain YO3AOP1) RepID=SSRP_SULSY
SsrA-binding protein {ECO:0000313|EMBL:KKP55362.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
smpB; SsrA-binding protein
coiled-coil (db=Coil db_id=coil from=120 to=145 evalue=NA)
gwf1_scaffold_566_60

Not on your lists

52542..52850
DNA (309bp) protein (103aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55363.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
Displaying items 31-60 of 69 in total

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