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gwf1_scaffold_850

Alias: WS6_GWF1_33_233_6

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf1_scaffold_850_1

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comp(34..324)
DNA (291bp) protein (97aa)
Nucleoid-associated protein {ECO:0000313|EMBL:KKP54797.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=51 to=61)
coiled-coil (db=Coil db_id=coil from=57 to=85 evalue=NA)
YbaB-like (db=superfamily db_id=SSF82607 from=4 to=84 evalue=1.1e-10 interpro_id=IPR004401 interpro_description=Uncharacterised protein family UPF0133)
gwf1_scaffold_850_2
WS6_GWF1_33_233, WS6, Bacteria

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comp(380..1960)
DNA (1581bp) protein (527aa)
Polymerase III subunit gamma and tau, DNA polymerase III subunit gamma/tau protein {ECO:0000313|EMBL:KKP45632.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KKP45632.1};; TaxID=1619096 species="Bacteria; candidate
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W2P9_DESAS rbh
seg (db=Seg db_id=seg from=496 to=508)
gwf1_scaffold_850_3
WS6_GWF1_33_233, WS6, Bacteria

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comp(2021..4429)
DNA (2409bp) protein (803aa)
Transcription-repair coupling factor, transcription-repair coupling factor (Superfamily II helicase) {ECO:0000313|EMBL:KKP45633.1}; EC=3.6.4.- {ECO:0000313|EMBL:KKP45633.1};; TaxID=1619096 species="Ba
Transcription-repair coupling factor n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CUJ7_9CLOT rbh
transcription-repair coupling factor
DEAD BOX ATP-DEPENDENT RNA HELICASE (db=HMMPanther db_id=PTHR10967 from=19 to=746 evalue=0.00024)
gwf1_scaffold_850_4
WS6_GWF1_33_233, WS6, Bacteria

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4471..5685
DNA (1215bp) protein (405aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45634.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
seg (db=Seg db_id=seg from=60 to=89)
(db=HMMPfam db_id=PF04307 from=38 to=131 evalue=2.7e-07 interpro_id=IPR007404 interpro_description=Protein of unknown function DUF457, transmembrane)
gwf1_scaffold_850_5
WS6_GWF1_33_233, WS6, Bacteria

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comp(5663..6220)
DNA (558bp) protein (186aa)
Peptidyl-tRNA hydrolase, peptidyl-tRNA hydrolase, PTH1 family {ECO:0000313|EMBL:KKP45635.1}; EC=3.1.1.29 {ECO:0000313|EMBL:KKP45635.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" sour
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBU6_THET1
PEPTIDYL-TRNA HYDROLASE (db=HMMPanther db_id=PTHR17224 from=1 to=184 evalue=1.7e-39 interpro_id=IPR001328 interpro_description=Peptidyl-tRNA hydrolase GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045))
gwf1_scaffold_850_6
WS6_GWF1_33_233, WS6, Bacteria

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comp(6211..6657)
DNA (447bp) protein (149aa)
Endoribonuclease YbeY n=1 Tax=Thermotoga thermarum DSM 5069 RepID=F7YTS9_9THEM
Uncharacterized protein {ECO:0000313|EMBL:KKP45636.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
seg (db=Seg db_id=seg from=139 to=148)
gwf1_scaffold_850_7
WS6_GWF1_33_233, WS6, Bacteria

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comp(6657..7100)
DNA (444bp) protein (148aa)
Uncharacterized protein yqeY n=2 Tax=Brevibacillus laterosporus RepID=H0UC76_BRELA
Uncharacterized protein {ECO:0000313|EMBL:KKP45637.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
glutamyl-tRNA(Gln) amidotransferase subunit E
seg (db=Seg db_id=seg from=49 to=61)
gwf1_scaffold_850_8

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comp(7121..7321)
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54804.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=47 to=66)
(db=HMMPfam db_id=PF01165 from=2 to=56 evalue=3.7e-11 interpro_id=IPR001911 interpro_description=Ribosomal protein S21 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S21p: ribosomal protein S21 (db=HMMTigr db_id=TIGR00030 from=1 to=60 evalue=7.5e-08 interpro_id=IPR001911 interpro_description=Ribosomal protein S21 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf1_scaffold_850_9

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comp(7367..9325)
DNA (1959bp) protein (653aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54805.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=29)
seg (db=Seg db_id=seg from=251 to=263)
B_ant_repeat: conserved repeat domain (db=HMMTigr db_id=TIGR01451 from=336 to=390 evalue=0.22 interpro_id=IPR001434 interpro_description=Domain of unknown function DUF11 GO=Cellular Component: extrachromosomal circular DNA (GO:0005727))
gwf1_scaffold_850_10

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comp(9365..10504)
DNA (1140bp) protein (380aa)
Membrane-associated zinc metalloprotease n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LU77_TEPAE
Membrane-associated zinc metalloprotease {ECO:0000313|EMBL:KKP54806.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwf1_scaffold_850_11
WS6_GWF1_33_233, WS6, Bacteria

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comp(10533..11078)
DNA (546bp) protein (182aa)
Ribosome-recycling factor n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4IL31_BIFAP
Ribosome recycling factor, ribosome recycling factor {ECO:0000313|EMBL:KKP45641.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_2
hypothetical protein
coiled-coil (db=Coil db_id=coil from=111 to=132 evalue=NA)
gwf1_scaffold_850_12
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(11133..13439)
DNA (2307bp) protein (769aa)
Two-component hybrid sensor and regulator, two-component system, sensor histidine kinase and response regulator {ECO:0000313|EMBL:KKP45642.1}; EC=2.7.13.3 {ECO:0000313|EMBL:KKP45642.1};; TaxID=1619096
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QL92_9CLOT
Sensor protein resE
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
gwf1_scaffold_850_13

Not on your lists

comp(13456..14280)
DNA (825bp) protein (275aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54809.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
coiled-coil (db=Coil db_id=coil from=237 to=258 evalue=NA)
gwf1_scaffold_850_14
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(14288..15295)
DNA (1008bp) protein (336aa)
ThiF family protein n=1 Tax=Streptomyces turgidiscabies Car8 RepID=L7FH73_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KKP45644.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
ThiF family protein
seg (db=Seg db_id=seg from=11 to=22)
gwf1_scaffold_850_15
WS6_GWF1_33_233, WS6, Bacteria

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comp(15411..16124)
DNA (714bp) protein (238aa)
Elongation factor Ts n=1 Tax=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) RepID=EFTS_COPPD
Translation elongation factor Ts, elongation factor Ts {ECO:0000313|EMBL:KKP45645.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33
tsf; translation elongation factor Ts
ELONGATION FACTOR TS (db=HMMPanther db_id=PTHR11741 from=45 to=236 evalue=1.1e-24 interpro_id=IPR001816 interpro_description=Translation elongation factor EFTs/EF1B GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
gwf1_scaffold_850_16

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comp(16143..17294)
DNA (1152bp) protein (384aa)
30S ribosomal protein S2 n=1 Tax=uncultured bacterium W5-47b RepID=H9BX54_9BACT
30S ribosomal protein S2 {ECO:0000313|EMBL:KKP54812.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
rpsB; 30S ribosomal protein S2
seg (db=Seg db_id=seg from=272 to=282)
gwf1_scaffold_850_17

Not on your lists

comp(17409..17690)
DNA (282bp) protein (94aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54813.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
coiled-coil (db=Coil db_id=coil from=35 to=56 evalue=NA)
gwf1_scaffold_850_18
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(17733..18368)
DNA (636bp) protein (212aa)
DNA repair protein RadC n=1 Tax=Sulfurihydrogenibium sp. (strain YO3AOP1) RepID=B2V8J4_SULSY
Repair protein RadC, DNA repair protein RadC protein {ECO:0000313|EMBL:KKP44718.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_2
UPF0758 protein
UPF0758 (db=PatternScan db_id=PS01302 from=164 to=169 evalue=0.0 interpro_id=IPR020891 interpro_description=Uncharacterised protein family UPF0758, conserved site)
gwf1_scaffold_850_19
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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comp(18408..20537)
DNA (2130bp) protein (710aa)
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RIFOXYB1_FULL_WS6_33_15_curated
DNA topoisomerase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z155_9BACT rbh
hypothetical protein
seg (db=Seg db_id=seg from=175 to=190)
gwf1_scaffold_850_20
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(20632..20991)
DNA (360bp) protein (120aa)
Penicillin-binding protein 2 n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BCG0_9FIRM
Penicillin-binding protein, penicillin-binding protein 2 {ECO:0000313|EMBL:KKP45650.1}; Flags: Fragment;; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bact
penicillin-binding protein
seg (db=Seg db_id=seg from=46 to=57)
Displaying 20 items

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